CCE-LTER Bibliography

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Journal Articles

Gangrade, S., and P.J.S. Franks Phytoplankton patches at oceanic fronts are linked to coastal upwelling pulses: Observations and implications in the California Current System. Journal of Geophysical Research: Oceans 128(3), 21 pgs 2023, DOI:10.1029/2022JC019095. CCE LTER Contribution #0543 Journal Link

Bograd, S.J., M.G. Jacox, E.L. Hazen, E. Lovecchio, I. Montes, M. Pozo Buil, L. Shannon, W.J. Sydeman, and R.R. Rykaczewski Climate change impacts on eastern boundary upwelling systems. Annual Reviews of Marine Science 15, 303-328 2023, DOI:10.1146/annurev-marine-032122-021945. CCE LTER Contribution #0525; AR2022 Journal Link

Laget, M., N. Llopis-Monferrer, J.-F. Maguer, A. Leynaert, and T. Biard Elemental content allometries and silicon uptake rates of planktonicRhizaria: Insights into their ecology and role in biogeochemical cycles. Limnol Oceanogr. , 16 + Supplement 2022 (online), DOI:10.1002/lno.12284. CCE LTER Contribution #0542 Journal Link

Décima, M. Zooplankton trophic structure and ecosystem productivity. Mar Ecol Prog Series 692, 23-42 2022, DOI:10.3354/meps14077. CCE LTER Contribution #0541 Journal Link

Chavarry, J.M., Law, K.L., Barton, A.D., Bowlin, N.M., Ohman, M.D., and Choy, C.A. Relative exposure to microplastics and prey for a pelagic forage fish. Environmental Research Letters 17, 2022, DOI:10.1088/1748-9326/ac7060. CCE LTER Contribution #0534; AR2022 Download PDF

Lilly, L.E., Cornuelle, B.D., and Ohman, M.D. Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System. Deep-Sea Research I 187, 2022, . CCE LTER Contribution #0533; AR2022 Journal Link

Orenstein, E.C., Ayata, S.-D., Maps, F., Biard, T., Becker, E.C., Benedetti, F., de Garidel-Thoron, T., Ellen, J.S., Ferrario, F., Giering, S.L.C., Guy-Haim, T., Hoebeke, L., Hvitfeldt Iversen, M., Kiørboe, T., Lalonde, J.-F., Lana, A., Laviale, M., Lombard, F., Lorimer, T., Martini, S., Meyer, A., Möller, K., Niehoff, B., Ohman, M.D., Pradalier, C., Romagnan, J.-B., Schröder, S.-M., Sonnet, V., Sosik, H.M., Stemmann, L.S., Stock, M., Terbiyik-Kurt, T., Valcárcel-Pérez, N., Vilgrain, L., Wacquet, G., Waite, A.M., and Irisson, J.-O. Machine learning techniques to characterize functional traits of plankton from image data. Limnology and Oceanography 67, 1647-1669 2022, DOI:10.1002/lno.12101. CCE LTER Contribution #0532; AR2022 Journal Link

Capotondi, A., M. Newman, T. Xu and E. Di Lorenzo An Optimal Precursor of Northeast Pacific Marine Heatwaves and Central Pacific El Niño Events. Geophysical Research Letters 49, 2022, DOI:10.1029/2021GL097350. CCE LTER Contribution #0529; AR2022 Download PDF

Mogen S. C., Lovenduski N. S., Dallmann A. R., Gregor L., Sutton A. J., Bograd S. J., Quiros N. C., Di Lorenzo E., Hazen E. L., Jacox M. G., Buil M. P. & Yeager S. Ocean biogeochemical signatures of the North Pacific Blob. Geophysical Research Letters 49, 2022, DOI:10.1029/2021GL096938. CCE LTER Contribution #0528; AR2022 Download PDF

Cordero-Quiros, N., M.G. Jacox, M. Pozo Buil, and S.J. Bograd Future changes in eddy kinetic energy in the California Current System from dynamically downscaled climate projections. Geophysical Research Letters 49, 2022 (online), DOI:10.1029/2022GL099042. CCE LTER Contribution #0526; AR2022 Journal Link

Pinti, J., A.W. Visser, C. Serra-Pompei, K. Andersen, M.D. Ohman, and T. Kiørboe Fear and loathing in the pelagic: how the seascape of fear impacts the biological carbon pump. Limnology and Oceanography 67(6), 1238-1256 2022, DOI:10.1002/lno.12073. CCE LTER Contribution #0523; AR2022 Journal Link

James, C.C., A.D. Barton, L.A. Zeigler-Allen,R.H. Lampe, A. Rabines, A. Schulberg, H. Zheng, R. Goericke, K.D. Goodwin, and A.E. Allen. Influences of nutrient supply on plankton microbiome biodiversity and distributions in a coastal upwelling region. Nature Communications 13(1), 2022 (online), DOI:10.1038/s41467-022-30139-4. CCE LTER Contribution #0522; AR2022 Download PDF

Bishop, J.K.B., V.J. Amaral, P.J. Lam, T.J. Wood, J.-M. Lee, A. Laubach, A. Barnard, C. Oricco, and A. Derr Transmitted Cross-Polarized Light Detection of Particulate Inorganic Carbon Concentrations in the Ocean Water Column: Ships to ARGO floats. Front. Remote Sens. 3, 2022 (online), DOI:10.3389/frsen.2022.837938. CCE LTER Contribution #0521; AR2022 Download PDF

Gastauer, S., C.F. Nickels, and M.D. Ohman Body size- and season-dependent diel vertical migration of mesozooplankton resolved acoustically in the San Diego Trough. Limnol Oceanogr. 67, 300-313 2022, DOI:10.1002/lno.11993. CCE LTER Contribution #0520; AR2022 Journal Link

Valencia, B., M. R. Stukel, A. E. Allen, J. P. McCrow, A. Rabines, M. R. Landry Microbial communities associated with sinking particles across an environmental gradient from coastal upwelling to the oligotrophic ocean. Deep-Sea Research I 179, 2022, DOI:10.1016/j.dsr.2021.103668. CCE LTER Contribution #0519; AR2022 Download PDF

White, M.E., P.R. Rafter, M.B. Stephens, M.R. Mazloff, S.D. Wankel, and L.I. Aluwihare Stable isotopes of nitrate reveal effects of the 2015-2016 El Niño and diatom iron limitation on nitrogen cycling in the southern California Current System. Limnology and Oceanography 67(10), 2140-2156 2022, DOI:10.1002/lno.12194. CCE LTER Contribution #0509 Journal Link

Ducklow, H., M. Cimino, K.O. Denton, W.R. Fraser, R. Hopcroft, R. Ji, A.J. Miller, M. Ohman, and H.M. Sosik Marine coastal pelagic ecosystem responses to climate variability and change. BioScience 72(9), 827-850 2022, DOI:10.1093/biosci/biac050. CCE LTER Contribution #0507; AR2021 Journal Link

Cordero-Quiros, N., A.J. Miller, Y. Pan, L. Balitaan, E. Curchitser and R. Dussin Physical-ecological response of the California Current System to ENSO events in ROMS-NEMURO. Ocean Dynamics 72, 21-36 2022, DOI:10.1007/s10236-021-01490-9. CCE LTER Contribution #0506; AR2021 Download PDF

Diner, R.E., Rabines, A.J., Zheng, H., Steele, J.A., John F. Griffith, J.F., and Allen, A.E. Pathogenic Vibrio species are associated with distinct environmental niches and planktonic taxa in Southern California (USA) aquatic microbiomes. mSystems 6(4), 2021, DOI:10.1128/mSystems.00571-21. CCE LTER Contribution #0531; AR2022 Journal Link

Cimino, M.A., M.G. Jacox, S.J. Bograd, S. Brodie, G. Carroll, E.L. Hazen, B.E. Lavaniegos, M.M. Morales, E. Satterthwaite, R.R. Rykaczewski Anomalous poleward advection facilitates episodic range expansions of pelagic red crabs in the eastern North Pacific. Limnology and Oceanography 66, 3176-3189 2021, DOI:10.1002/lno.11870. CCE LTER Contribution #0524; AR2022 Download PDF

Whitmore, B.M. and M.D. Ohman Zooglider-measured association of zooplankton with the fine-scale vertical prey field. Limnology and Oceanography 66, 3811-3827 2021, DOI:10.1002/lno.11920. CCE LTER Contribution #0516; AR2022 Download PDF

Lilly, L. E. and M. D. Ohman Euphausiid spatial displacements and habitat shifts in the southern California Current System in response to El Ni–no variability. Progress in Oceanography 193, 2021, DOI:10.1016/j.pocean.2021.102544. CCE LTER Contribution #0514; AR 2021 Journal Link

Harms, T.K., P.M. Groffman, L.I. Aluwihare, C. Craft, W.R. Wieder, S.E. Hobbie, S.G. Baer, J.M. Blair, S. Frey, C.K. Remucal, J.A. Rudgers, S.L. Collins, and LTER OM Working Group Patterns and trends of organic matter processing and transport: Insights from the US Long-Term Ecological Research Network.. Climate Change Ecology 2, 2021 (online), DOI:10.1016/j.ecochg.2021.100025. CCE LTER Contribution #0510; AR2022 Journal Link

Choi E.S., L E. Furtado, and R.S. Burton Spatial and temporal variation in the species diversity of coastal California fish eggs. Marine Ecology Progress Series 669, 139-149 2021, DOI:10.3354/meps13723. CCE LTER Contribution #0505; AR2021 Journal Link

Weber, E.D., and others State of the California Current 2019-2020: Back to the Future with Marine Heatwaves?. Frontiers in Marine Science 8, 2021, DOI:10.3389/fmars.2021.709454. CCE LTER Contribution #0503; AR2021 Journal Link

Kahru, M., C. Anderson, A.D. Barton, M.L. Carter, D. Catlett, U. Send, H.M. Sosik, E.L. Weiss, and B.G. Mitchell Satellite detection of dinoflagellate blooms off California by UV reflectance ratios. Elementa: Science of the Anthropocene 9(1), 2021, DOI:10.1525/elementa.2020.00157. CCE LTER Contribution #0502; AR2021 Journal Link

Chenillat F., P. Rivière, and M.D. Ohman On the sensitivity of plankton ecosystem models to the formulation of zooplankton grazing. PLoS ONE 16(5), 27 2021 (online), DOI:10.1371/journal.pone.0252033. CCE LTER Contribution #0500; AR2021 Journal Link

Xu, T. T., M. Newman, A. Capotondi and E. Di Lorenzo The Continuum of Northeast Pacific Marine Heatwaves and Their Relationship to the Tropical Pacific. Geophysical Research Letters 48(2), 10 2021, DOI:10.1029/2020GL090661. CCE LTER Contribution #0499; AR2021 Journal Link

Matthews, S.A., E. Goetze, and M.D. Ohman Recommendations for interpreting zooplankton metabarcoding and integrating molecular methods with morphological analyses. ICES Journal of Marine Science 78(9), 3387-3396 2021, DOI:10.1093/icesjms/fsab107. CCE LTER Contribution #0498; AR2021 Journal Link

Zaba, K. D., P. J. S. Franks, and M. D. Ohman The California Undercurrent as a Source of Upwelled Waters in a Coastal Filament. Journal of Geophysical Research: Oceans 126, 13 pgs 2021, DOI:10.1029/2020JC016602. CCE LTER Contribution #0495; AR2021 Journal Link

Chabert, P., F. d'Ovidio, V. Echevin, M. R. Stukel , and M. D. Ohman Cross-Shore Flow and Implications for Carbon Export in the California Current Ecosystem: A Lagrangian Analysis. Journal of Geophysical Research: Oceans 126, 14 pgs 2021, DOI:10.1029/2020JC016611. CCE LTER Contribution #0494; AR2021 Journal Link

Nagarkar, M., M. Wang, B. Valencia, and B. Palenik Spatial and temporal variations in Synechococcus microdiversity in the Southern California coastal ecosystem. Environ. Microbiology 23(1), 252-256 2021, DOI:10.1111/1462-2920.15307. CCE LTER Contribution #0493; AR2021 Download PDF

Bourne, H. L., J. K. B. Bishop, E. J. Connors, and T. J. Wood Carbon Export and Fate Beneath a Dynamic Upwelled Filament off the California Coast. Biogeosciences 18(10), 3053-3086 2021, DOI:10.5194/bg-18-3053-2021. CCE LTER Contribution #0491; AR2021 Journal Link

Amaya, D. J., M. A. Alexander, A. Capotondi, C. Deser, K. B. Karnauskas, A. J. Miller and N. J. Mantua Are long-term changes in mixed layer depth influencing North Pacific marine heatwaves?. Bulletin of the American Meteorological Society 102(1), S59-S66 2021, DOI:10.1175/BAMS-D-20-0144.1. CCE LTER contribution #0478; AR2020 Journal Link

Rastetter, E.B., Ohman, M.D., Elliott, K.J., Rehage, J.S., Rivera-Monroy, V.H., Boucek, R.E., Castaneda-Moya, E., Danielson, T.M., Gough, L., Groffman, P.M., Jackson, C.R., Miniat, C.F., and Shaver, G.R. Future trajectories of ecosystems in the U.S. Long-Term Ecological Research Network: The importance of time lags. Ecosystems 12(5), 2021, DOI:10.1002/ecs2.3431. CCE LTER Contribution #0470; AR2020 Download PDF

Valencia, B., M.R. Stukel, A.E. Allen, J.P. McCrow, A. Rabines, B. Palenik, and M.R. Landry Relating sinking and suspended microbial communities in the California Current Ecosystem: Digestion resistance and the contributions of phytoplankton taxa to export. Environ. Microbiology 23(11), 6734-6748 2021, DOI:10.1111/1462-2920.15736. CCE LTER Contribution #0405; RR2018, AR2018 Download PDF

Yati, E., S. Minobe, N. Mantua, S. Ito and E. Di Lorenzo Marine Ecosystem Variations Over the North Pacific and Their Linkage to Large-Scale Climate Variability and Change. Frontiers in Marine Science 7, 15 2020, DOI:10.3389/fmars.2020.578165. CCE LTER Contribution #0511; AR2021 Download PDF

Choi, E.S., E. Saberski, T. Lorimer, C. Smith, U. Kandage-don, R.S. Burton, and G. Sugihara The importance of making testable predictions: A cautionary tale. PLoS One 15(12), 2020, DOI:10.1371/journal.pone.0236541. CCE LTER Contribution #0504; AR2021 Journal Link

Krause, J.W., Brzezinski, M.A., Largier, J.L., McNair, H.M., Maniscalco, M., Bidle, K.D., Allen, A.E., and Thamatrakoln, K. The interaction of physical and biological factors drives phytoplankton spatial distribution in the northern California Current. Limnology and Oceanography , 2020 (online), DOI:10.1002/lno.11431. CCE LTER Contribution #0487; AR2020 Download PDF

Evans, N., I. D. Schroeder, M. Pozo Buil, M. G. Jacox, and S. J. Bograd Drivers of deoxygenation in the southern California Current system. Geophysical Research Letters 46, 9 pgs 2020 (online), DOI:10.1029/2020GL089274. CCE LTER Contribution #0484; AR2020 Journal Link

Jacox, M.G., M.A. Alexander, S. Siedlecki, K. Chen, Y.-O. Kwon, S. Brodie, I. Ortiz, D. Tommasi, M.J. Widlansky, D. Barrie, A. Capotondi, W. Cheng, E. Di Lorenzo, C. Edwards, J. Fiechter, P. Fratantoni, E.L. Hazen, A.J. Hermann, A. Kumar, A.J. Miller, D. Pirhalla, M. Pozo Buil, S. Ray, S.C. Sheridan, A. Subramanian, P. Thompson, L. Thorne, H. Annalamalai, S.J. Bograd, R.B. Griffis, H. Kim, A. Mariotti, M. Merrifield, and R. Rykaczewski Seasonal-to-interannual prediction of U.S. coastal marine ecosystems: Forecast methods, mechanisms of predictability, and priority developments. Progress in Oceanography 183, 2020, DOI:10.1016/J.pocean.2020.102307. CCE LTER Contribution #0483; AR2020 Journal Link

Ruhl, H. A., F. L. Bahr, S. A. Henson, W. B. Hosking, B. Espinola, M. Kahru, P. Daniel, and C. A. Edwards Understanding the remote influences of ocean weather on the episodic pulses of particulate organic carbon flux. Deep-Sea Research, Part II 173, 2020, DOI:10.1016/j.dsr2.2020.104741. CCE LTER Contribution #0482; AR2020 Journal Link

Santora, J. A., N. J. Mantua, I. D. Schroeder, J. C. Field, E. L. Hazen, S. J. Bograd, W. J. Sydeman, B. K. Wells, J. Calambokidis, L. Saez, D. Lawson, and K. A. Forney Habitat compression and ecosystem shifts as potential links between marine heatwave and record whale entanglements. Nature Communications 11(1), 2020, DOI:10.1038/s41467-019-14215-w. CCE LTER Contribution #0480; AR2020 Download PDF

Sydeman, W. J., S. Dedman, M. García-Reyes, S. A. Thompson, J. A. Thayer, A. Bakun, and A. D. MacCall Sixty-five years of northern anchovy population studies in the southern California Current: a review and suggestion for sensible management. ICES Journal of Marine Science 77, 486-499 2020, DOI:10.1093/icesjms/fsaa004. CCE LTER Contribution #0479; AR2020 Journal Link

Swalethorp R., L. Aluwihare, A. R. Thompson, M.D. Ohman, and M. R. Landry Errors associated with compound-specific d15N analysis of amino acids in preserved fish sampled purified by high-pressure liquid chromatography. Limnology and Oceanography: Methods 18, 259-270 2020, DOI:10.1002/lom3.10359. CCE LTER Contribution #0476; AR2020 Journal Link

Szesciorka A. R., L. T. Ballance, A. Sirovic, A. Rice, M.D. Ohman, J.A. Hildebrand, and P. J. S, Franks Timing is everything: Drivers of interannual variability in blue whale migration. Scientific Reports 10(7710), 2020 (online), DOI:10.1038/s41598-020-64855-y. CCE LTER Contribution #0475; AR2020 Journal Link

Biard T, and M. D. Ohman Vertical niche definition of test-bearing protists (Rhizaria) into the twilight zone revealed by in situ imaging. Limnology and Oceanography , 2020, DOI:10.1002/lno.11472. CCE LTER Contribution #0474; AR2020 Download PDF

Kranz, S. A., S. Wang, T. B. Kelly, M. R. Stukel, R. Goericke, M. R. Landry, N. Cassar Lagrangian Studies of Marine Production: A Multimethod Assessment of Productivity Relationshipsin the California Current EcosystemUpwelling Region. Journal of Geophysical Research: Oceans 125(6), 2020, DOI:10.1029/2019JC015984. CCE LTER Contribution #0472; AR2020 Journal Link

Amaya, D. J., A. J. Miller, S.-P. Xie, and Y. Kosaka Physical drivers of the summer 2019 North Pacific marine heatwave. Nature Communications 11, 2020 (online), DOI:10.1038/s41467-020-15820-w. CCE LTER Contribution #0471; AR2020 Journal Link

Brandon, J. A., A. Freibott, and L. M. Sala Patterns of suspended and salp-ingested microplastic debris in the North Pacific investigated with epifluorescence microscopy. Limnol. Oceanogr. Letters 5, 46-53 2020, DOI:10.1002/lol2.10127. CCE LTER Contribution #0467; AR2020 Download PDF

Stukel, M. R. and K. A. Barbeau Investigating the nutrient landscape in a coastal upwelling region and its relationship to the biological carbon pump. Geophysical Research Letters 47, 2020, DOI:10.1029/2020GL087351. CCE LTER Contribution #0464; AR2020 Download PDF

Stephens, B., Wankel, S., Beman, M., Rabines, A., Allen, A., and Aluwihare, L. Euphotic zone nitrification in the California Current Ecosystem. Limnology and Oceanography 65, 790-806 2020, DOI:10.1002/lno.11348. CCE LTER Contribution #0461; AR2020 Download PDF

Kahru, M., R. Goericke, T. B. Kelly, and M. R. Stukel Satellite estimation of carbon export by sinking particles in the California Current calibrated with sediment trap data. Deep-Sea Research II 173, 2020, DOI:10.1016/j.dsr2.2019.104639. CCE LTER Contribution #0443; AR2019 Journal Link

Wang, S., S. Kranz, T. B. Kelly, H. Song, M. R. Stukel, and N. Cassar Lagrangian studies of net community production: assessing the effect of diel and multi-day non-steady state factors and vertical fluxes. Journal of Geophysical Research: Biogeosciences 125(6), 2020, DOI:10.1029/2019JG005569. CCE LTER Contribution #0442; AR2019 Journal Link

Capotondi, A., P. D. Sardeshmukh, E. Di Lorenzo, A. C. Subramanian and A. J. Miller Predictability of US West Coast Ocean Temperatures is not solely due to ENSO. Nature Scientific Reports 9, 2019, DOI:10.1038/s41598-019-47400-4. CCE LTER Contribution #0512; AR2021 Journal Link

Coale, T.H., M. Mooseburner, A. Horák, M. Obornik, K.A. Barbeau, and A.E. Allen Reduction-dependent siderophore assimilation in a model pennate diatom. PNAS 116(47), 23609-23617 2019, DOI:10.1073/pnas.1907234116. CCE LTER Contribution #0488; AR2020 Download PDF

Sathyendranath, S., R. J. W. Brewin, C. Brockmann, ...., M. Kahru, et. al. An ocean-colour time series for use in climate studies: the experience of the ocean-colour climate change initiative (OC-CCI). Sensors 19, 2019, DOI:10.3390/s19194285. CCE LTER Contribution #0481; AR2020 Journal Link

Thompson, A.R., I.D. Schoeder, S.J. Bograd, et al. STATE OF THE CALIFORNIA CURRENT 2018–19: A NOVEL ANCHOVY REGIME AND A NEW MARINE HEATWAVE?. CalCOFI Reports 60, 1-66 2019, . CCE LTER Contribution #0473; AR2020 Download PDF

White, M. E., P. A. Rafter, B. M. Stephens, S. D. Wankel, and L. I. Aluwihare Recent increases in water column denitrification in the seasonally suboxic bottom waters of the Santa Barbara Basin. Geophysical Research Letters 46(12), 6786-6795 2019, DOI:10.1029/2019GL082075. CCE LTER Contribution #0466; AR2020 Journal Link

Lilly, L. E., Send, U., Lankhorst, M., Martz, T. R., Feely, R. A., Sutton, A. J., & Ohman, M. D. Biogeochemical anomalies at two southern California Current System moorings during the 2014–2016 Warm Anomaly?El Niño sequence. Journal of Geophysical Research: Oceans 124, 6886-6903 2019, DOI:10.1029/2019JC015255. CCE LTER Contribution #0463; AR2020 Journal Link

Lombard, F., Boss, E., Waite, A.M., Vogt, M., Uitz, J., Stemmann, L., Sosik, H.M., Schulz, J., Romagnan, J.-B., Picheral, M., Pearlman, J., Ohman, M.D., Niehoff, B., Möller, K.O., Miloslavich, P., Lara-Lopez, A., Kudela, R., Lopes, R.M., Kiko, R., Karp-Boss, L., Jaffe, J.S., Iversen, M.H., Irisson, J.-O., Fennel, K., Hauss, H., Guidi, L., Gorsky, G., Giering, S.L.C., Gaube, P., Gallager, S., Dubelaar, G., Cowen, R.K., Carlotti, F., Briseño-Avena, C., Berline, L., Benoit-Bird, K., Bax, N., Batten, S., Ayata, S.D., Artigas, L.F., Appeltans, W. Globally consistent quantitative observations of planktonic ecosystems.. Frontiers in Marine Science 6(196), 2019, DOI:10.3389/fmars.2019.00196. CCE LTER Contribution #0460; AR2020 Journal Link

Hetherington, E. D., Kurle, C. M., Ohman, M. D., and Popp, B. N. Effects of chemical preservation on bulk and amino acid isotope ratios of zooplankton, fish, and squid tissues. Rapid Communications in Mass Spectrometry 33, 935-945 2019, DOI:10.1002/rcm.8408. CCE LTER Contribution #0459; AR2020 Download PDF

Ohman, M. D. A sea of tentacles: Optically-discernable traits resolved from planktonic organisms in situ.. ICES Journal of Marine Science 76(7), 1959-1972 2019, DOI:10.1093/icesjms/fsz184. CCE LTER Contribution #0458; AR2020 Download PDF

Gaskell, D. E., Ohman, M. D., and Hull, P. M. Zooglider-based measurements of planktonic foraminifera in the California Currrent System. Journal of Foraminiferal Research 49, 390-404 2019, DOI:10.2113/gsjfr.49.4.390. CCE LTER Contribution #0457; AR2020 Journal Link

Ellen, J. S., C. A. Graaf, and M. D. Ohman Improving plankton image classification using context metadata. Limnology and Oceanography - Methods 17, 439-461 2019, DOI:10.1002/lom3.10324. CCE LTER Contribution #0456; AR2020 Download PDF

Whitmore, B. M., C. F. Nickels, and M. D. Ohman A comparison between Zooglider and shipboard net and acoustic mesozooplankton sensing systems. Journal of Plankton Research 41(4), 521-533 2019, DOI:10.1093/plankt/fbz033. CCE LTER Contribution #0455; AR2020 Download PDF

Kranzler, C.F., J.W. Krause, M.A. Brzezinski, B.R. Edwards, W.P. Biggs, M. Maniscalco, J.P. McCrow, B.A.S. Van Mooy, K.D. Bidle, A.E. Allen, and K. Thamatrakoln Silicon limitation facilitates virus infection and mortality of marine diatoms. Nature Microbiology 4, 1790-1797 2019, DOI:10.1038/s41564-019-0502-x. CCE LTER Contribution #0454; AR2020 Download PDF

Stukel, M. R. and T.B. Kelly The carbon: 234Thorium ratios of sinking particles in the California current ecosystem 2: Examination of a thorium sorption, desorption, and particle transport model. Marine Chemistry 211, 37-51 2019, DOI:10.1016/j.marchem.2019.03.005. CCE LTER Contribution #0451; AR2019 Journal Link

Kolody, B., J. McCrow, L. Zeigler-Allen, F. Aylward, K. Fontanez, A. Moustafa, M. Moniruzzaman, F. Chavez, C. Scholin, E. Allen, A. Worden, E.F. DeLong, and A.E. Allen Diel transcriptional rhythms of a California Current plankton microbiome reveal iron limitation, enduring viral infection, and seasonal acclimation. The ISME Journal , 2019, DOI:10.1038/s41396-019-0472-2. CCE LTER Contribution #0450; AR2019 Download PDF

Sainz, J. F., E. Di Lorenzo, S. Gaines, T. W. Bell, R. J. Miller, and H. Lenihan Spatial planning of Marine Aquaculture under Climate Decadal Variability: A case study for Mussel Farms in California. Frontiers of Marine Science 6(253), 2019, DOI:10.3389/fmars.2019.00253. CCE LTER Contribution #0449; AR2019 Download PDF

Fender, C. K., T. B. Kelly, L. Guidi, M. D. Ohman, M. C. Smith, and M. R. Stukel Investigating particle size-flux relationships and the biological pump across a range of plankton ecosystem states from coastal to oligotrophic. Frontiers in Marine Science 6(603), 2019, DOI:10.3389/fmars.2019.00603. CCE LTER Contribution #0446; AR2019 Download PDF

Stukel, M. R., M. D. Ohman, T. B. Kelly, and T. Biard The roles of suspension-feeding and flux-feeding zooplankton as gatekeepers of particle flux into the mesopelagic ocean. Frontiers in Marine Science 6(397), 2019, DOI:10.3389/fmars.2019.00397. CCE LTER Contribution #0444; AR2019 Journal Link

Bograd, S.J., I.D. Schroeder, and M.G. Jacox A water mass history of the southern California Current System. Geophysical Research Letters 46, 6690-6698 2019, DOI:10.1029/2019GL082685. CCE LTER Contribution #0441; AR2019 Journal Link

Kelly, T.B., P.C. Davison, R. Goericke, M.R. Landry, M.D. Ohman and M.R. Stukel The importance of mesozooplankton diel vertical migration for sustaining a mesopelagic food web. Frontiers in Marine Science 6(508), 2019, DOI:10.3389/fmars.2019.00508. CCE LTER Contribution #0440; AR2019 Download PDF

Stukel, M. R., R. Goericke and M. R. Landry Predicting primary production in the southern California Current Ecosystem from chlorophyll, nutrient concentrations, and irradiance. BioRXIV , 2019, . CCE LTER Contribution #0439; AR2019 Journal Link

Bourne, H.L., J.K.B. Bishop, T.J. Wood, T.J. Loew, and Y. Liu Carbon Flux Explorer optical assessment of C, N and P fluxes. Biogeosciences 16, 1249-1264 2019, DOI:10.5194/bg-16-1249-2019. CCE LTER Contribution #0436; AR2019 Journal Link

de Verneil, A., P.J.S. Franks, and M.D. Ohman Frontogenesis and the Creation of Fine-Scale Vertical Phytoplankton Structure. Journal of Geophysical Research: Oceans 124, 2019, DOI:10.1029/2018JC014645. CCE LTER Contribution #0435; AR2019 Journal Link

Liguori, G. and E. Di Lorenzo Separating the North and South Pacific Meridional Modes contributions to ENSO and tropical decadal variability. Geophys. Res. Lett. 46(2), 906-915 2019, DOI:10.1029/2018GL080320. CCE LTER Contribution #0433; AR2019 Journal Link

Cordero-Quiros, N., A.J. Miller, S.C. Subramanian, J.Y. Luo, and A. Capotondi Composite physical–biological El Niño and La Niña conditions in the California Current System in CESM1-POP2-BEC. Ocean Modelling 142, 1-18 2019, DOI:10.1016/j.ocemod.2019.101439. CCE LTER Contribution #0432; AR2019 Journal Link

Stukel, M. R., T. B Kelly, L. I. Aluwihare, K. A. Barbeau, R. Goericke, J. W. Krause, M. R. Landry, and M. D. Ohman The Carbon:234Thorium ratios of sinking particles in the California Current Ecosystem 1: Relationships with plankton ecosystem dynamics. Marine Chemistry 212, 1-15 2019, DOI:10.1016/j.marchem.2019.01.003. CCE LTER Contribution #0428; AR2019 Journal Link

Nickels, C.F., L.M. Sala, and M.D. Ohman The euphausiid prey field for blue whales around a steep bathymetric feature in the southern California current system. Limnol. Oceanogr. 64, 390-405 2019, DOI:10.1002/lno.11047. CCE LTER Contribution #0425; AR2019 Download PDF

Kaplan, I.C., T.B. Francis, A.E. Punt, L.E. Koehn, E. Curchitser, F. Hurtado-Ferro, K.F. Johnson, S.E. Lluch-Cota, W.J. Sydeman, T.E. Essington, N. Taylor, K. Holsman, A.D. MacCall, and P.S. Levin A multi-model approach to understanding the role of Pacific sardine in the California Current food web. Marine Ecology Progress Series 617-618, 307-321 2019, DOI:10.3354/meps12504. CCE LTER Contribution #0412; AR2018 Journal Link

Gutierrez-Rodriguez, A., M.R. Stukel, A. Lopes dos Santos, T. Biard, R. Scharek, D. Vaulot, M.R. Landry, and F. Not High contribution of Rhizaria (Radiolaria) to vertical export in the California Current Ecosystem revealed by DNA metabarcoding. ISME Journal 13(4), 964-976 2019, DOI:10.1038/s41396-018-0322-7. CCE LTER Contribution #0409; AR2018 Journal Link

Lévy, M., P.J.S. Franks, and K.S. Smith The role of submesoscale currents in structuring marine ecosystems. Nature Communications 9(1), 2018, DOI:10.1038/s41467-018-07059-3. CCE LTER Contribution #0448; AR2019 Download PDF

Duke, E.M., A.E. Harada and R.S.Burton Large interannual variation in spawning in San Diego marine protected areas captured by molecular identification of fish eggs. Mar Ecol Prog Series 604, 199-210 2018, DOI:10.3354/meps12738. CCE LTER Contribution #0447; AR2019 Journal Link

Thompson, A.R., I.D. Schoeder, S.J. Bograd, et al. State of the California Current 2017–18: Still Not Quite Normal in the North and Getting Interesting in the South. CalCOFI Reports 59, 1-66 2018, . CCE LTER Contribution #0445; AR2019 Download PDF

Stukel, M.R., M. Décima, M.R. Landry and K.E. Selph Nitrogen and Isotope Flows Through the Costa Rica Dome Upwelling Ecosystem: The Crucial Mesozooplankton Role in Export Flux. Global Biogeochem. Cycles 32, 1815-1832 2018, DOI:10.1029/2018GB005968. CCE LTER Contribution #0438; AR2019? Journal Link

Hogle, S.L., C.L. Dupont, B.M. Hopkinson, A.L. King, K.N. Buck, K.L. Roe, R.K. Stuart, A.E. Allen, E.L. Mann, Z.I. Johnson, and K.A. Barbeau Pervasive iron limitation at subsurface chlorophyll maxima of the California Current. PNAS 115(52), 13300-13305 2018, DOI:10.1073/pnas.1813192115. CCE LTER Contribution #0434; AR2019 Download PDF

Jacox, M.G., C.A. Edwards, E.J. Hazen, and S.J. Bograd Coastal upwelling revisited: Ekman, Bakun, and improved upwelling indices for the U.S. West Coast. Journal of Geophysical Research-Oceans 123, 7332-7350 2018, DOI:10.1029/2018JC014187. CCE LTER Contribution #0431; AR2019 Journal Link

Ohman, M. D., R. E. Davis, J. T. Sherman, K. R. Grindley, B. M. Whitmore, C. F. Nickels, and J. S. Ellen Zooglider: An autonomous vehicle for optical and acoustic sensing of zooplankton. Limnol. Oceanogr.: Methods , 2018, DOI:10.1002/lom3.10301. CCE LTER Contribution #0430; AR2019 Download PDF

Kilpatrick, T., S.-P. Xie, A. J. Miller, and N. Schneider Satellite observations of enhanced chlorophyll variability in the Southern California Bight. Journal of Geophysical Research: Oceans 123, 7550-7563 2018, DOI:10.1029/2018JC014248. CCE LTER Contribution #0429; AR2019 Journal Link

Smith Jr., K.L., H.A. Ruhl, C.L. Huffard, M. Messié, and M. Kahru Episodic organic carbon fluxes from surface ocean to abyssal depths during long-term monitoring in NE Pacific. PNAS 115(48), 12235-12240 2018, DOI:10.1073/pnas.1814559115. CCE LTER Contribution #0426; AR2019 Journal Link

Stephens, B. M., M. Porrachia, S. Dovel, M. Roadman, R. Goericke, and L. I. Aluwihare Nonsinking organic matter production in the California Current. Global Biogeochemical Cycles 32, 2018, DOI:10.1029/2018GB005930. CCE LTER Contribution #0424; AR2019 Journal Link

Ohman, M.D. Introduction to collection of papers on the response of the southern California Current Ecosystem to the Warm Anomaly and El Niño, 2014–16. Deep-Sea Research Part I 140, 1-3 2018, DOI:10.1016/j.dsr.2018.08.011. CCE LTER Contribution #0423; AR2019 Journal Link

Netburn, A.N. and J.A. Koslow Mesopelagic fish assemblages across oceanic fronts: A comparison of three frontal systems in the southern California Current Ecosystem. Deep Sea Research Part I 134, 80-91 2018, DOI:10.1016/j.dsr.2018.03.005. CCE LTER Contribution #0422; AR2019 Journal Link

Nickels, C.F., L.M. Sala, and M.D. Ohman The morphology of euphausiid mandibles used to assess selective predation by blue whales in the southern sector of the California Current System. Journal of Crustacean Biology 38(5), 563-573 2018, DOI:10.1093/jcbiol/ruy062. CCE LTER Contribution #0421; AR2019 Download PDF

Chenillat, F., P.J.S. Franks, X. Capet, P. Riviere, N. Grima, B. Blanke, and V. Combes Eddy properties in the Southern California Current System. Ocean Dynamics 68(7), 761-777 2018, DOI:10.1007/s10236-018-1158-4. CCE LTER Contribution #0420; AR2018 Journal Link

Dunlop, K.M., T. Jarvis, K.J. Benoit-Bird, C.M. Waluk, D.W. Caress, H. Thomas and K.L. Smith, Jr. Detection and characterization of deep-sea benthopelagic animals from an autonomous underwater vehicle with a multibeam echosounder: a proof of concept and description of data-processing methods. Deep-Sea Res. Part I 134, 64-79 2018, DOI:10.1016/j.dsr.2018.01.006. CCE LTER Contribution #0418; AR2018 Journal Link

Kenitz, K. M., A. W. Visser, M. D. Ohman, M. R. Landry and K. H. Andersen Community trait distribution across environmental gradients. Ecosystems , 2018, DOI:10.1007/s10021-018-0314-5. CCE LTER Contribution #0416; AR2018 Journal Link

Black, B.A., P. van der Sleen, E. Di Lorenzo, D. Griffin, W.J. Sydeman, J.B. Dunham, R.R. Rykaczewski, M. Garcia-Reyes, M. Safeeq, I. Arismendi, and S.J. Bograd Rising synchrony controls western North American ecosystems. Global Change Biology (24), 2305-2314 2018, DOI:10.1111/gcb.14128. CCE LTER Contribution #0414; AR2018 Download PDF

Santora, J.A., R. Zeno, J.G. Dorman, and W.J. Sydeman. Submarine canyons represent an essential habitat network for krill hotspots in a Large Marine Ecosystem. Scientific Reports 8(1), 7579 2018 (online), DOI:10.1038/s41598-018-25742-9. CCE LTER Contribution #0413; AR2018 Download PDF

Stukel M.R., M. Décima and T.B. Kelly A new approach for incorporating 15N isotopic data into linear inverse ecosystem models with Markov Chain Monte Carlo sampling. PLoS ONE 13(6), e0199123 2018, DOI:10.1371/journal.pone.0199123. CCE LTER Contribution #0408; AR2018 Journal Link

Stukel M. R., T. Biard, J. Krause, and M. D. Ohman Large phaeodaria in the twilight zone: Their role in the carbon cycle. Limnol. Oceanogr. 63(6), 2579-2594 2018, DOI:10.1002/lno.10961. CCE LTER Contribution #0407; RR2018, AR2018 Download PDF

Biard T., J.W. Krause, M.R. Stukel, and M.D. Ohman The significance of giant Phaeodarians (Rhizaria) to biogenic silica export in the California Current Ecosystem. Global Biogeochemical Cycles 32, 987-1004 2018, DOI:10.1029/2018GB005877. CCE LTER Contribution #0406; RR2018 Journal Link

Morrow, R.M., M.D. Ohman, R. Goericke, T.B. Kelly, B.M. Stephens, and M.R. Stukel CCE V: Primary production, mesozooplankton grazing, and the biological pump in the California Current Ecosystem: Variability and Response to El Nino. Deep-Sea Research Part I 140, 52-62 2018, DOI:10.1016/j.dsr.2018.07.012. CCE LTER Contribution #0404; RR2018, AR2018 Journal Link

Lilly, L.E. and M.D. Ohman CCE IV: El Niño-related zooplankton variability in the southern California Current System. Deep-Sea Research Part I 140, 36-51 2018, DOI:10.1016/j.dsr.2018.07.015. CCE LTER Contribution #0403; RR2018 Journal Link

Nickels, C.E. and M.D. Ohman CCE III: Persistent functional relationships between copepod egg production rates and food concentration through anomalously warm conditions in the California Current Ecosystem. Deep-Sea Research Part I 140, 26-35 2018, DOI:10.1016/j.dsr.2018.07.001. CCE LTER Contribution #0402; RR2018 Journal Link

Kelly, T.B., R. Goericke, M. Kahru, H. Song, and M. Stukel CCE II: Spatial and interannual variability in export efficiency and the biological pump in an eastern boundary current upwelling system with substantial lateral advection. Deep-Sea Research Part I 140, 14-25 2018, DOI:10.1016/j.dsr.2018.08.007. CCE LTER Contribution #0401; RR2018, AR2018 Journal Link

Kahru, M., M.G. Jacox, and M.D. Ohman CCE I: Decrease in the frequency of oceanic fronts and surface chlorophyll concentration in the California Current System during the 2014-2016 northeast Pacific warm anomalies. Deep-Sea Research Part I 140, 4-13 2018, DOI:10.1016/j.dsr.2018.04.007. CCE LTER Contribution #0400; RR2018, AR2018 Journal Link

Liguori, G. and E. Di Lorenzo Meridional Modes and Increasing Pacific Decadal Variability Under Anthropogenic Forcing. Geophys. Res. Lett. 45(2), 983-991 2018, DOI:10.1002/2017GL076548. CCE LTER Contribution #0398; AR2018 Journal Link

Lindegren, M., Checkley Jr., D.M., Koslow, J.A., Goericke, R., and Ohman, M.D. Climate-mediated changes in marine ecosystem regulation during El Nino. Global Change Biology 24, 796-809 2018, DOI:10.1111/gcb.13993. CCE LTER Contribution #0397; RR2018 Download PDF

Liu, Z.Y. and E. Di Lorenzo Mechanisms and Predictability of Pacific Decadal Variability. Current Climate Change Reports 4(2), 128-144 2018, DOI:10.1007/s40641-018-0090-5. CCE LTER Contribution #0392; FRII2017, AR2018 Download PDF

Stukel, M. R., H. Song, R. Goericke and A. J. Miller The role of subduction and gravitational sinking in particle export, carbon sequestration, and the remineralization length scale in the California Current Ecosystem. Limnol. Oceanogr. 63, 363-383 2018, DOI:10.1002/lno.10636. CCE LTER Contribution #0383; AR2017,FRII2017 Download PDF

Siegelman-Charbit, L., J.A. Koslow, M.G. Jacox, E.L. Hazen, S.J. Bograd, E.F. Miller, and J.A. McGowan Physical forcing on fish abundance in the southern California Current System. Fisheries Oceanography 27, 475-488 2018, DOI:10.1111/fog.12267. CCE LTER Contribution #0367; AR2016 Download PDF

Taylor, A.G. and M.R. Landry Phytoplankton biomass and size structure across trophic gradients in the southern California Current and adjacent ocean ecosystems. Mar Ecol Prog Series 592, 1-17 2018, DOI:10.3354/meps12526. CCE LTER Contribution #0292; AR2018 Journal Link

Smith, K.L., Jr., A.D. Sherman, P.R. McGill, R.G. Henthorn, J. Ferreira and C.L. Huffard. Evolution of monitoring an abyssal time-series station in the N.E. Pacific over 28 years. Oceanography 30(4), 72-81 2017, DOI:10.5670/oceanog.2017.425. CCE LTER Contribution #0417; AR2018 Download PDF

Santora, J.A., J.G. Dorman, and W.J. Sydeman Modeling spatiotemporal dynamics of krill aggregations: size, intensity, persistence, and coherence with seabirds. Ecography 40, 1300-1314 2017, DOI:10.1111/ecog.02250. CCE LTER Contribution #0415; AR2018 Download PDF

Kahru, M. Ocean productivity from space: Commentary. Global Biogeochem. Cycles 131, 2017, DOI:10.1002/2016GB005582. CCE LTER Contribution #0411; AR2018 Download PDF

Joh, Y. and E. Di Lorenzo Increasing coupling between NPGO and PDO leads to prolonged marine heatwaves in the Northeast Pacific. Geophysical Research Letters 44, 11,663 - 11,671 2017, DOI:10.1002/2017GL075930. CCE LTER Contribution #0388; AR2017,FRII2017,AR2018 Journal Link

Li, Q.P., P.J.S. Franks and M.R. Landry Recovering growth and grazing rates from nonlinear dilution experiments. Limnol. Oceanogr. 62(5), 1825-1835 2017, DOI:10.1002/lno.10536. CCE LTER Contribution #0385; AR2017,FRII2017 Download PDF

Pozo Buil, M. and E. Di Lorenzo Decadal dynamics and predictability of oxygen and subsurface tracers in the California Current System. Geophysical Research Letters 44(9), 4204-4213 2017, DOI:10.1002/2017GL072931. CCE LTER Contribution #0375; FRII2017 Download PDF

Stukel, M. R., Aluwihare, L. I., Barbeau, K. A., Chekalyuk, A. M., Goericke, R., Miller, A. J., Ohman, M. D., Ruacho, A., Song, H., Stephens, B., and Landry, M. R. Mesoscale ocean fronts enhance carbon export due to gravitational sinking and subduction. PNAS 114(6), 1252-1257 2017, DOI:10.1073/pnas.1609435114. CCE LTER Contribution #0357; AR2017,FRII2017 Journal Link

Santora, J.A., W.J. Sydeman, I.D. Schroeder, J.C. Field, R. Miller, and B.K. Wells Persistence of trophic hotspots and relation to human impacts within an upwelling marine ecosystem. Ecological Applications 27(2), 560-574 2017, DOI:10.1002/eap.1466. CCE LTER Contribution #0335; AR2017,FRII2017 Download PDF

Anderson, C. R., R.M. Kudela, M. Kahru, Y. Chao, L.K. Rosenfeld, F.L. Bahr, D.M. Anderson and T.A. Norris Initial skill assessment of the California Harmful Algae Risk Mapping (C-HARM) system. Harmful Algae 59, 1-18 2016, DOI:10.1016/j.hal.2016.08.006. CCE LTER Contribution #0410; AR2018 Journal Link

Hogle, S.L., R.M. Bundy, J.M. Blanton, E.E. Allen, and K.A. Barbeau Copiotrophic marine bacteria are associated with strong iron-binding ligand production during phytoplankton blooms. Limnology and Oceanography Letters 1, 36-43 2016, DOI:10.1002/lol2.10026. CCE LTER Contribution #0389; AR2017,FRII2017 Download PDF

Saldivar-Lucio, R., E. Di Lorenzo, M. Nakamura, H. Villalobos, D. Lluch-Cota and P. Del Monte-Luna Macro-Scale Patterns in Upwelling/Downwelling Activity at North American West Coast. Plos One 11(11), 1-23 2016, DOI:10.1371/journal.pone.0166962. CCE LTER Contribution #0387; AR2017,FRII2017 Download PDF

McGill, P.R., R.G. Henthorn, L.E. Bird, C.L. Huffard, D.V. Klimov and K.L. Smith, Jr. Sedimentation event sensor: New ocean instrument for in situ imaging and fluorometry of sinking particulate matter. Limnol. Oceanogr. Methods 14(12), 853-863 2016, DOI:10.1002/lom3.10131. CCE LTER Contribution #0386; AR2017,FRII2017 Download PDF

Brandon, J., M. Goldstein and M. D. Ohman Long-term aging and degradation of microplastic particles: Comparing in situ oceanic and experimental weathering patterns. Marine Pollution Bulletin 110, 299-308 2016, DOI:10.1016/j.marpolbul.2016.06.048. CCE LTER Contribution #0378; AR2017,FRII2017 Journal Link

McClatchie, S., R. Goericke, A. Leising, T. Auth, E. Bjorkstedt, R. Robertson, R. D. Brodeur, X. Du, E. A. Daly, C. A. Morgan, F. P. Chavez, A. J. Debich, J. Hildebrand, J. Field, K. Sakuma, M. G. Jacox, M. Kahru, R. Kudela, C. Anderson, B. E. Lavaniegos, J. Gomez-Valdes, S. P. A. Jimenez-Rosenberg, R. McCabe, S. R. Melin, M. D. Ohman, L. M. Sala, B. Peterson, J. Fisher, I. D. Schroeder, S.J. Bograd, E. L. Hazen, S. R. Schneider, R. T. Golightly, R. M. Suryan, A. J. Gladics, S. Loredo, J. M. Porquez, A. R. Thompson, E. D. Weber, W. Watson, V. Trainer, P Warzybok, R. Bradley, and J. Jahncke State of the California Current 2015–16: Comparisons with the 1997–98 EL NIÑO. CalCOFI Reports 57, 5-62 2016, . CCE LTER Contribution #0376; AR2017,FRII2017,RR2018 Journal Link

Di Lorenzo, E. and N. J. Mantua Multi-year persistence of 2014/15 North Pacific marine heatwave. Nature Climate Change 6, 1042-1048 2016, DOI:10.1038/nclimate3082. CCE LTER Contribution #0374; AR2016 Journal Link

Newman, M., M. A. Alexander, T. R. Ault, K. M. Cobb, C. Deser, E. Di Lorenzo, N. J. Mantua, A. J. Miller, S. Minobe, H. Nakamura, N. Schneider, D. J. Vimont, A. S. Phillips, J. D. Scott and C. A. Smith The Pacific Decadal Oscillation, revisited. Journal of Climate 29, 4399-4427 2016, DOI:10.1175/JCLI-D-15-0508.1. CCE LTER Contribution #0372; AR2016 Download PDF

Chenillat, F., P.J.S. Franks, and V. Combes Biogeochemical properties of eddies in the California Current System. Geophysical Research Letters 43(11), 5812–5820 2016, DOI:10.1002/2016GL068945. CCE LTER Contribution #0371; AR2016 Download PDF

Martínez-Fuentes, L.M, G. Gaxiola-Castro, E. Gómez-Ocampo, M. Kahru Effects of interannual events (1997-2012) on the hydrography and phytoplankton biomass of Sebastián Vizcaíno Bay. Ciencias Marinas 42(2), 81-97 2016, DOI:10.7773/cm.v42i2.2626. CCE LTER Contribution #0370; AR2016 Journal Link

Jacox, M.G., E.L. Hazen, K.D. Zaba, D.L. Rudnick, C.A. Edwards, A.M. Moore, and S.J. Bograd Impacts of the 2015-2016 El Niño on the California Current System: early assessment and comparison to past events. Geophysical Research Letters 43(13), 7072–7080 2016, DOI:10.1002/2016GL069716. CCE LTER Contribution #0364; AR2016 Download PDF

Jacox, M.G., E.L. Hazen, and S.J. Bograd Optimal environmental conditions and anomalous ecosystem responses: constraining bottom-up controls of phytoplankton biomass in the California Current System. Nature Scientific Reports 6:27612, 2016, DOI:10.1038/srep27612. CCE LTER Contribution #0363; AR2016 Download PDF

Smith, K.L., C.L. Huffard, A.D. Sherman and H.A. Ruhl Decadal change in sediment community oxygen consumption in the abyssal Northeast Pacific. Aquat. Geochem. 22(5), 401-417 2016, DOI:10.1007/s10498-016-9293-3. CCE LTER Contribution #0359; AR2016 Download PDF

Bundy, R.M., Carter, M., Jiang, M. and Barbeau, K.A. Iron-binding ligands in the southern California Current System: mechanistic studies. Front. Mar. Sci. 3:27, 2016, DOI:10.3389/fmars.2016.00027. CCE LTER Contribution #0358; AR2016 Download PDF

Lindegren, M., Checkley Jr., D.M., Ohman, M.D., Koslow, J.A., and Goericke, R. Resilience and stability of a pelagic marine ecosystem. Proceedings of the Royal Society B 283, 20151931 2016, DOI:10.1098/rspb.2015.1931. CCE LTER Contribution #0348; AR2016 Journal Link

Ohman, M. D. and J. -B. Romagnan Nonlinear effects of body size and optical attenuation on Diel Vertical Migration by zooplankton. Limnology and Oceanography 61, 765-770 2016, DOI:10.1002/lno.10251. CCE LTER Contribution #0346; AR2016 Download PDF

Kahru, M., R.M. Kudela, C.R. Anderson, and B.G. Mitchell Optimized merger of ocean chlorophyll algorithms. IEEE Geoscience and Remote Sensing Letters 12(11), 2282-2285 2015, DOI:10.1109/LGRS.2015.2470250.. CCE LTER Contribution #0369; AR2016 Download PDF

Whitlock, R.E., E.L. Hazen, A. Walli, C. Farwell, S.J. Bograd, D.G. Foley, M. Castleton, and B.A. Block Direct quantification of energy intake in an apex marine predator suggests physiology is a key driver of migrations. Science Advances 1:e1400270, 2015, . CCE LTER Contribution #0368; AR2016 Download PDF

Rykaczewski, R.R., J.P. Dunne, W.J. Sydeman, M. Garcia-Reyes, B.A. Black, and S.J. Bograd Poleward displacement of coastal upwelling-favorable winds in the ocean's eastern boundary currents through the 21st century. Geophysical Research Letters 42, 6424-6431 2015, DOI:10.1002/2015GL064694. CCE LTER Contribution #0366; AR2016 Download PDF

Leising, A.W., I.D. Schroeder, S.J. Bograd, J. Abell, R. Durazo, G. Gaxiola-Castro, E.P. Bjorkstedt, J. Field, K. Sakuma, R.R. Robertson, R. Goericke, W.P. Peterson, R.D. Brodeur, C. Barcelo, T.D. Auth, E.A. Daly, R.M. Suryan, A.J. Gladics, J.M. Porquez, S. McClatchie, E.D. Weber, W. Watson, J.A. Santora, W.J. Sydeman, S.R. Melin, F.P. Chavez, R.T. Golightly, S.R. Schneider, J. Fisher, C. Morgan, R. Bradley, P. Warzybok The state of the California Current, 2014-15: Impacts of the warm-water "blob". CalCOFI Reports 56, 31-68 2015, . CCE LTER Contribution #0365; AR2016 Download PDF

Garcia-Reyes, M., W.J. Sydeman, D.S. Schoeman, R.R. Rykaczewski, B.A. Black, A.J. Smit, and S.J. Bograd Under pressure: Climate change, upwelling and eastern boundary upwelling ecosystems. Frontiers in Marine Science 2:109, 2015, DOI:10.3389/fmars.2015.00109. CCE LTER Contribution #0362; AR2016 Download PDF

Dorman, J.G., W.J. Sydeman, S.J. Bograd, and T.M. Powell An individual-based model of Euphausia pacifica in the California Current. Progress in Oceanography 138, 504-520 2015, DOI:10.1016/j.pocean.2015.02.006. CCE LTER Contribution #0361; AR2016 Journal Link

Harada, A.E., Lindgren E.A., Hermsmeier M.C., Rogowski P.A., Terrill E., and Burton R.S. Monitoring spawning activity in a Southern California marine protected area using molecular identification of fish eggs. PLoS One 10(8), e0134647 2015, DOI:10.1371/journal.pone.0134647. CCE LTER Contribution #0360; AR2016 Download PDF

Szoboszlai, A.I., J.A. Thayer, S.A. Wood, W.J. Sydeman, and L.E. Koehn Forage species in predator diets: Synthesis of data from the California Current. Ecological Informatics 29, 45-56 2015, DOI:10.1016/j.ecoinf.2015.07.003. CCE LTER Contribution #0355; AR2016 Journal Link

Dunlop K.M, L.A. Kuhnz, H.A. Ruhl, C.L. Huffard, D.W Caress, R.G. Henthorn, B.W. Hobson, P. McGill, K.L. Smith, Jr An evaluation of deep-sea benthic megafauna length measurements obtained with laser and stereo camera methods. Deep-Sea Research I 96, 38-48 2015, DOI:10.1016/j.dsr.2014.11.003. CCE LTER Contribution #0354; AR2016 Journal Link

Laguionie?Marchais, C., L.A. Kuhnz, C.L. Huffard, H.A. Ruhl, and K.L. Smith Jr. Spatial and temporal variation in sponge spicule patches at Station M, northeast Pacific. Marine Biology 162, 617-624 2015, DOI:10.1007/s00227-014-2609-1. CCE LTER Contribution #0353; AR2016 Download PDF

Asch, R. G. Climate change and decadal shifts in the phenology of larval fishes in the California Current ecosystem. Proceedings of the National Academy of Sciences of the United States of America 112, E4065-E4074 2015, DOI:10.1073/pnas.1421946112. CCE LTER Contribution #0347; AR2016 Download PDF

Santora, J. A., and W. J. Sydeman Persistence of hotspots and variability of seabird species richness and abundance in the southern California Current. Ecosphere 6(11), 214 2015, . CCE LTER Contribution #0345; AR2016 Journal Link

Stukel, M. R., M. Kahru, C. R. Benitez-Nelson, M. Decima, R. Goericke, M. R. Landry, and M. D. Ohman Using Lagrangian-based process studies to test satellite algorithms of vertical carbon flux in the eastern North Pacific Ocean. J. Geophys. Res. Oceans 120, 7208–7222 2015, DOI:10.1002/2015JC011264. CCE LTER Contribution #0343; AR2016 Download PDF

de Verneil, A., and P. J. S. Franks A pseudo-Lagrangian method for remapping ocean biogeochemical tracer data: Calculation of net Chl-a growth rates. J. Geophys. Res. Oceans 120, 4962-4979 2015, DOI:10.1002/2015JC010898. CCE LTER Contribution #0342; AR2016 Download PDF

Chenillat, F., B. Blanke, N. Grima, P.J.S. Franks, X. Capet and P. Rivière Quantifying tracer dynamics in moving fluids: a combined Eulerian-Lagrangian approach. Front. Environ. Sci. 3, 43 2015, DOI:10.3389/fenvs.2015.00043. CCE LTER Contribution #0340; AR2016 Download PDF

Chenillat, F., P.J.S. Franks, P. Rivière, X. Capet, N. Grima and B. Blanke Plankton dynamics in a cyclonic eddy in the Southern California Current System. Journal of Geophysical Research: Oceans 120, 5566-5588 2015, DOI:10.1002/2015JC010826. CCE LTER Contribution #0339; AR2016 Journal Link

Lugomela, C., T.J. Lyimo, L.A. Namkinga, S. Moyo, R. Goericke and S. Sjöling Co-variation of Cholera with Climatic and Environmental Parameters in Coastal Regions of Tanzania. Western Indian Ocean J. Mar. Sci. 13(1), 93-105 2015, . CCE LTER Contribution #0337; AR2016 Download PDF

Netburn, A.N. and J.A. Koslow Dissolved oxygen as a constraint on daytime deep scattering layer depth in the southern California current ecosystem. Deep-Sea Research I 104, 149-158 2015, DOI:10.1016/j.dsr.2015.06.006. CCE LTER Contribution #0336; AR2016 Journal Link

Di Lorenzo, E. Climate science: The future of coastal ocean upwelling. Nature 518(7539), 310-311 2015, DOI:10.1038/518310a. CCE LTER Contribution #0334; AR2015 Journal Link

Pozo Buil, M. and E. Di Lorenzo Decadal changes in Gulf of Alaska upwelling source waters. Geophysical Research Letters 42(5), 1488-1495 2015, DOI:10.1002/2015GL063191. CCE LTER Contribution #0333; AR2015 Download PDF

Dupont, C.L., J.P. McCrow, R. Valas, A. Moustafa, N. Walworth, U. Goodenough, R. Roth, S.L. Hogle, J. Bai, Z.I. Johnson, E. Mann, B. Palenik, K.A. Barbeau, J. Craig Venter and A.E. Allen Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. The ISME Journal 9, 1076-1092 2015, DOI:10.1038/ismej.2014.198. CCE LTER Contribution #0332; AR2015 Download PDF

Bundy, R. M., H.A.N. Abdulla, P.G. Hatcher, D.V. Biller, K.N. Buck and K.A. Barbeau Iron-binding ligands and humic substances in the San Francisco Bay estuary and estuarine-influenced shelf regions of coastal California. Marine Chemistry 173, 183-194 2015, DOI:10.1016/j.marchem.2014.11.005. CCE LTER Contribution #0331; AR2015 Download PDF

Brzezinski, M.A., J.W. Krause, R.M. Bundy, K.A. Barbeau, P.J.S. Franks, R. Goericke, M.R. Landry and M.R. Stukel Enhanced silica ballasting from iron stress sustains carbon export in a frontal zone within the California Current. Journal of Geophysical Research - Oceans 120, 1-16 2015, DOI:10.1002/2015JC010829. CCE LTER Contribution #0330; AR2016 Download PDF

Krause, J.W., M.A. Brzezinski, R. Goericke, M.R. Landry, M.D. Ohman, M.R. Stukel and A.G. Taylor Variability in diatom contributions to biomass, organic matter production and export across a frontal gradient in the California Current Ecosystem. Journal of Geophysical Research - Oceans 120(2), 1032-1047 2015, DOI:10.1002/2014JC010472. CCE LTER Contribution #0329; AR2015 Download PDF

Edwards, C.A., A.M. Moore, I. Hoteit and B.D. Cornuelle Regional ocean data assimilation. Annu. Rev. Mar. Sci. 7, 6.1-6.22 2015, DOI:10.1146/annurev-marine-010814-015821. CCE LTER Contribution #0328; AR2015 Download PDF

Raghukumar, K., C. A. Edwards, N. L. Goebel, G. Broquet, M. Veneziani, A. M. Moore, J. P. Zehr Impact of assimilating physical oceanographic data on modeled ecosystem dynamics in the California Current System. Progress in Oceanography 138, 546-558 2015, DOI:10.1016/j.pocean.2015.01.004. CCE LTER Contribution #0327; AR2015 Journal Link

Dorman, J.G., W.J. Sydeman, M. Garcia-Reyes, R.A. Zeno, and J.A. Santora Modeling krill aggregations in the central-northern California Current. Mar. Ecol. Prog. Series 528, 87-99 2015, DOI:10.3354/meps11253. CCE LTER Contribution #0326; AR2015 Download PDF

Jackson, G.A., D.M. Checkley Jr and M. Dagg 99: 75-86, doi: 10.1016/j.dsr.2015.02.001 Settling of particles in the upper 100m of the ocean detected with autonomous profiling floats off California. Deep Sea Research I 99, 75-86 2015, http://dx.doi.org/10.1016/j.dsr.2015.02.001. CCE LTER Contribution #0325; AR2015 Download PDF

Jacox, M., S.J. Bograd, E.L. Hazen, J. Fiechter Sensitivity of the California Current nutrient supply to wind, heat, and remote ocean forcing. Geophys. Res. Lett. 42, 5950-5957 2015, DOI:10.1002/2015GL065147. CCE LTER Contribution #0324; AR2016 Download PDF

Bakun, A., B. A. Black, S. J. Bograd, M. Garcia-Reyes, A. J. Miller, R. R. Rykaczewski and W. J. Sydeman Anticipated effects of climate change on coastal upwelling ecosystems. Current Climate Change Reports 1, 85-93 2015, DOI:10.1007/s40641-015-0008-4. CCE LTER Contribution #0320; AR2015 Download PDF

Powell, J.R. and M.D. Ohman Changes in zooplankton habitat, behavior, and acoustic scattering characteristics across glider-resolved fronts in the Southern California Current System. Progress in Oceanography 134, 77-92 2015, doi:10.1016/j.pocean.2014.12.011. CCE LTER Contribution #0317; AR2015 Journal Link

Bednarsek, N. and M.D. Ohman Changes in pteropod distributions and shell dissolution across a frontal system in the California Current System. Mar. Ecol. Prog. Series 523, 93-103 2015, DOI:10.3354/meps11199. CCE LTER Contribution #0316; AR2015 Download PDF

Pasulka, A.L., T.J. Samo, and M.R. Landry Grazer and viral impacts on microbial growth and mortality in the southern California Current Ecosystem. Journal of Plankton Research 37(2), 1-17 2015, DOI:10.1093/plankt/fbv011. CCE LTER Contribution #0315; AR2015 Journal Link

Davison, P., J.A. Koslow and R.J. Kloser Acoustic biomass estimation of mesopelagic fish: backscattering from individuals, populations, and communities. ICES Journal of Marine Science 72(5), 1413–1424 2015, DOI:10.1093/icesjms/fsv023. CCE LTER Contribution #0314; AR2015 Download PDF

Goericke, R. and M.D. Ohman Introduction to CCE-LTER: Responses of the California Current Ecosystem to climate forcing. Deep Sea Research II 112, 1-5 2015, DOI:10.1016/j.dsr2.2014.12.001. CCE LTER Contribution #0313; AR2015 Journal Link

Koslow, J. A. and J. Couture Pacific Ocean observation programs: Gaps in ecological time series. Marine Policy 51, 408-414 2015, http://dx.doi.org/10.1016/j.marpol.2014.09.003. CCE LTER Contribution #0310; AR2015 Journal Link

Campbell, G. S., L. Thomas, K. Whitaker, A. B. Douglas, J. Calambokidis and J. A. Hildebrand Inter-annual and seasonal trends in cetacean distribution, density and abundance in waters off southern California. Deep-Sea Research II 112, 143-157 2015, DOI:10.1016/j.dsr2.2014.10.008. CCE LTER Contribution #0304;AR2015 Journal Link

Goericke, R., S. J. Bograd and D. S. Grundle Denitrification and flushing of the Santa Barbara Basin bottom waters. Deep-Sea Research II 112, 53-60 2015, DOI:10.1016/j.dsr2.2014.07.012. CCE LTER Contribution #0303; AR2015 Journal Link

Kahru, M., Jacox, M.G., Lee, Z, Kudela, R.M., Manzano-Sarabia, M., and Mitchell, B.G. Optimized multi-satellite merger of primary production estimates in the California Current using inherent optical properties. Journal of Marine Systems 147, 94-102 2015, DOI:10.1016/j.jmarsys.2014.06.003. CCE LTER Contribution #0296; AR2015 Journal Link

Lee, Z., Marra, J., Perry, M.J., and Kahru, M. Estimating oceanic primary productivity from ocean color remote sensing: A strategic assessment. Journal of Marine Systems 149, 50-59 2015, DOI:10.1016/j.jmarsys.2014.11.015. CCE LTER Contribution #0295; AR2015 Journal Link

Bograd, S.J., M. Pozo Buil, E. Di Lorenzo, C.G. Castro, I. Schroeder, R. Goericke, C. Anderson, C. Benitez-Nelson, and F.A. Whitney Changes in source waters to the Southern California Bight. Deep-Sea Research II 112, 42-52 2015, DOI:10.1016/j.dsr2.2014.04.009. CCE LTER Contribution #0289; AR2015 Journal Link

Davison, P., A. Lara-Lopez, J. A. Koslow Mesopelagic fish biomass in the southern California current ecosystem. Deep-Sea Research II 112, 129-142 2015, DOI:10.1016/j.dsr2.2014.10.007. CCE LTER Contribution #0288; AR2015 Journal Link

Miller, A.J., H. Song, and A.C. Subramanian The physical oceanographic environment during the CCE-LTER Years: Changes in climate and concepts. Deep-Sea Research II 112, 6-17 2015, DOI:10.1016/j.dsr2.2014.01.003. CCE LTER Contribution #0284; AR2015 Journal Link

Johnston, T. M. S. and D. L. Rudnick Trapped diurnal internal tides, propagating semidiurnal internal tides, and mixing estimates in the California Current System from sustained glider observations, 2006-2012. Deep -Sea Research II 112, 61-78 2015, DOI:10.1016/j.dsr2.2014.03.009. CCE LTER Contribution #0249; AR2015 Journal Link

Sydeman, W. J., S. A. Thompson, J. A. Santora, J. A. Koslow, R. Goericke, and M. D. Ohman Climate-ecosystem change off southern California: Time-dependent seabird predator–prey numerical responses. Deep-Sea Research II 112, 158-170 2015, DOI:10.1016/j.dsr2.2014.03.008. CCE LTER Contribution #0241; AR2015 Journal Link

Kahru, M., Z. Lee, R. M. Kudela, M. Manzano-Sarabia and B. G. Mitchell Multi-satellite time series of inherent optical properties in the California Current. Deep-Sea Research II 112, 91-106 2015, DOI:10.1016/j.dsr2.2013.07.023. CCE LTER Contribution #0240; AR2015 Journal Link

Taylor, A. G., M. R. Landry, K. E. Selph, J. J. Wokuluk Temporal and spatial patterns of microbial community biomass and composition in the southern California Current Ecosystem. Deep-Sea Research II 112, 117-128 2015, DOI:10.1016/j.dsr2.2014.02.006. CCE LTER Contribution #0239; AR2015 Journal Link

Powell, J. R. and M. D. Ohman Covariability of zooplankton gradients with glider-detected density fronts in the Southern California Current System. Deep-Sea Research II 112, 79-90 2015, DOI:10.1016/j.dsr2.2014.04.002. CCE LTER Contribution #0238; AR2015 Journal Link

Jacox, M. G., C. A. Edwards, M. Kahru, D. L. Rudnick, and R. M. Kudela The potential for improving remote primary productivity estimates through subsurface chlorophyll and irradiance measurement. Deep-Sea Research II 112, 107-116 2015, DOI:10.1016/j.dsr2.2013.12.008. CCE LTER Contribution #0237; AR2015 Journal Link

Davis, A. and E. Di Lorenzo Interannual forcing mechanisms of California Current transports I: Meridional Currents. Deep Sea Research II 112, 18-30 2015, DOI:10.1016/j.dsr2.2014.02.005. CCE LTER Contribution #0236; AR2015 Journal Link

Davis, A. and E. Di Lorenzo Interannual forcing mechanisms of California Current transports II: Mesoscale Eddies. Deep Sea Research II 112, 31-41 2015, DOI:10.1016/j.dsr2.2014.02.004. CCE LTER Contribution #0235; AR2015 Journal Link

Ruhl, H.A., B.J. Bett, S.J.M. Hughes, C.H.S. Alt, E.J. Ross, R.S. Lampitt, C.A. Pebody, K.L. Smith, and D.S.M. Billett Links between deep-sea respiration and community dynamics. Ecology 95(6), 1651-1662 2014, . CCE LTER Contribution #0350; AR2016 Download PDF

Kuhnz, L.A., H. A. Ruhl, C.L. Huffard, and K. L. Smith Jr. Rapid changes and long-term cycles in the benthic megafaunal community observed over 24 years in the abyssal northeast Pacific. Progress in Oceanography 124, 1-11 2014, DOI:10.1016/j.pocean.2014.04.007. CCE LTER Contribution #0349; AR2016 Download PDF

Sydeman, W.J., M. Garcia-Reyes, D. Schoeman, R. Rykaczewski, S.A. Thompson, B.A. Black, and S.J. Bograd Climate change and wind intensification in coastal upwelling ecosystems. Science 345(6192), 77-80 2014, DOI:10.1126/science.1251635. CCE LTER Contribution #0323; AR2015 Journal Link

Schroeder, I.D., J.A. Santora, A. Moore, C. Edwards, J. Fiechter, E.L. Hazen, S.J. Bograd, J. Field, and B.K. Wells Application of a data-assimilative regional ocean modeling system for assessing California Current System ocean conditions, krill, and juvenile rockfish interannual variability. Geophysical Research Letters 41, 5942–5950 2014, DOI:10.1002/2014GL061045. CCE LTER Contribution #0322; AR2015 Download PDF

Bograd, S.J., E.L. Hazen, E.A. Howell, and A.B. Hollowed The fate of fisheries oceanography: Introduction to the special issue. Oceanography 27(4), 21-25 2014, . CCE LTER Contribution #0321; AR2015 Journal Link

Kang, Y. -S. and M. D. Ohman Comparison of Long-Term Trends of Zooplankton from Two Marine Ecosystems Across the North Pacific: Northeastern Asian Marginal Sea and Southern California Current System. CalCOFI Reports 55, 169-182 2014, . CCE LTER Contribution #0312; AR2015 Download PDF

Bresnahan, P.J., Martz T.R., Takeshita Y., Johnson K.S., and LaShomb M. Best practices for autonomous measurement of seawater pH with the Honeywell Durafet. Methods in Oceanography 9, 44-60 2014, DOI:10.1016/j.mio.2014.08.003. CCE LTER Contribution #0309; AR2015 Journal Link

Martz, T., U. Send, M.D. Ohman, Y. Takeshita, P. Bresnahan, H.-J. Kim, and S.H. Nam Dynamic variability of biogeochemical ratios in the Southern California Current System. Geophysical Research Letters 41(7), 2496-2501 2014, DOI:10.1002/2014gl059332. CCE LTER Contribution #0307; AR2015 Journal Link

Kahru, M., R.M. Kudela, C.R. Anderson, M. Manzano-Sarabia, B.G. Mitchell Evaluation of satellite retrievals of ocean chlorophyll-a in the California Current. Remote Sensing 6, 8524-8540 2014, DOI:10.3390/rs6098524. CCE LTER Contribution #0306; AR2015 Download PDF

Taniguchi, D.A.A., Franks, P.J.S., Poulin, F.J. Planktonic biomass size spectra: an emergent property of size-dependent physiological rates, food web dynamics, and nutrient regimes. Mar. Ecol. Prog. Series 514, 13-33 2014, DOI:10.3354/meps10968. CCE LTER Contribution #0302; AR2015 Journal Link

Wang, S., Lambert, W., Giang, S., Goericke, R., and Palenik, B. Microalgal assemblages in a poikilohaline pond. Journal of Phycology 50(2), 303-309 2014, DOI:10.1111/jpy.12158. CCE LTER Contribution #0301; AR2014 Journal Link

Goebel, N.L., C.A. Edwards, M.J. Follows, and J.P. Zehr Modeled diversity effects on microbial ecosystem functions of primary production, nutrient uptake, and remineralization. Ecology 95(1), 153-163 2014, http://dx.doi.org/10.1890/13-0421.1. CCE LTER Contribution #0294; AR2014 Download PDF

Landry, M.R. On database biases and hypothesis testing with dilution experiments: Response to Comment by Latasa. Limnology and Oceanography 59(3), 1095-1096 2014, DOI:10.4319/lo.2014.59.3.1095. CCE LTER Contribution #0291; AR2015 Download PDF

Freibott, A., L. Linacre and M.R. Landry A slide preparation technique for light microscopy analysis of ciliates preserved in Acid Lugol–s fixative. Limnology and Oceanography: Methods 12, 54-62 2014, DOI:10.4319/lom.2014.12.54. CCE LTER Contribution #0290; AR2014 Download PDF

Smith, Jr., K. L., A. D. Sherman, C. L. Huffard, P. R. McGill, R. Henthorn, S. Von Thun, H. A. Ruhl, M. Kahru, and M. D. Ohman Large salp bloom export from the upper ocean and benthic community response in the abyssal northeast Pacific: Day to week resolution. Limnology and Oceanography 59(3), 745-757 2014, DOI:10.4319/lo.2014.59.3.0745. CCE LTER Contribution #0287; AR2014 Download PDF

Goldstein, M.C, H.S. Carson, M. Eriksen Relationship of diversity and habitat area in North Pacific plastic?associated rafting communities. Marine Biology 161(6), 1441-1453 2014, DOI:10.1007/s00227-014-2432-8. CCE LTER Contribution #0267; AR2015 Journal Link

Bundy, R.M., Biller, D.V., Buck, K.N., Bruland, K.W. and Barbeau, K.A. Distinct pools of dissolved iron-binding ligands in the surface and benthic boundary layer of the California Current. Limnology and Oceanography 59(3), 769-787 2014, DOI:10.4319/lo.2014.59.3.0769. CCE LTER Contribution #0259; AR2014 Download PDF

Taniguchi, D.A.A., M.R. Landry, P.J.S. Franks and K.E. Selph Size-specific growth and grazing rates for picophytoplankton in coastal and oceanic regions of the eastern Pacific. Mar. Ecol. Prog. Series 509, 87-101 2014, DOI:10.3354/meps10895. CCE LTER Contribution #0255; AR2015 Download PDF

Pedler, B., Aluwihare, L.I., and Azam, F. Single bacterial strain capable of significant contribution to carbon cycling in the surface ocean. PNAS 111(20), 7202-7207 2014, DOI:10.1073/pnas.1401887111. CCE LTER Contribution #0251; AR2015 Journal Link

Sydeman, W.J., S.A. Thompson, M. García-Reyes, M. Kahru, and J.L. Largier Multivariate ocean-climate indicators (MOCI) for the central California Current: environmental change, 1990-2010.. Progress in Oceanography 120, 352-369 2014, http://dx.doi.org/10.1016/j.pocean.2013.10.017. CCE LTER Contribution #0250; AR2014 Download PDF

Koslow, J.A., P. Davison, A. Lara-Lopez, M. Ohman Epipelagic and mesopelagic fishes in the southern California Current System: Ecological interactions and oceanographic influences on their abundance. Journal of Marine Systems 138, 20-28 2014, DOI:10.1016/j.jmarsys.2013.09.007. CCE LTER Contribution #0246; AR2015 Journal Link

Henderson, E.E., K.A. Forney, J.P. Barlow, J.A. Hildebrand, A.B. Douglas, J. Calambokidis, and W.J. Sydeman Effects of fluctuations in sea-surface temperature on the occurrence of small cetaceans off Southern California. Fishery Bulletin 112, 159-177 2014, DOI:10.7755/FB.112.2-3.5. CCE LTER Contribution #0223; AR2015 Download PDF

Laguionie-Marchais, C., D.S.M. Billett, G.L.D. Paterson, H.A. Ruhl, E.H. Soto, K.L. Smith Jr., and S. Thatje Inter-annual dynamics of abyssal polychaete communities in the North East Pacific and North East Atlantic–A family-level study. Deep Sea Research I 75, 175-186 2013, DOI:10.1016/j.dsr.2012.12.007. CCE LTER Contribution #0352; AR2016 Journal Link

Jeffreys, R.M., C. Burke, A.J. Jamieson, B.E. Narayanaswamy, H.A. Ruhl, K.L. Smith Jr., and U. Witte Feeding Preferences of Abyssal Macrofauna Inferred from In Situ Pulse Chase Experiments. PLoS ONE 8(11), e80510 2013, DOI:10.1371/journal.pone.0080510. CCE LTER Contribution #0351; AR2016 Download PDF

Koslow, J.A. and J. Couture Follow the fish. Nature 502, 163-164 2013, . CCE LTER Contribution #0311 Journal Link

Wells, B., I.D. Schroeder, J.A. Santora, E.L. Hazen, S.J. Bograd, E. Bjorkstedt, V.J. Loeb, S. McClatchie, E.D. Weber, W. Watson, A.R. Thompson, W. Peterson, R.D. Brodeur,,J. Harding, J. Field, K. Sakuma, S. Hayes, N. Mantua, W.J. Sydeman, M. Losekoot, S.A. Thompson, J. Largier, S.Y. Kim, F.P. Chavez, C. Barcelo, P. Warzybok,,R. Bradley, J. Jahncke, R. Goericke, G.S. Campbell, J.A. Hildebrand, S.R. Melin, R.L. DeLong, J. Gomez-Valdes, B. Lavaniegos, G. Gaxiola-Castro, R.T. Golightly,,S.R. Schneider, N. Lo, R.M. Suryan, A.J. Gladics, C.A. Horton, J. Fisher, C. Morgan, J. Peterson, E.A. Daly, T.D. Auth, and J. Abell State of the California Current 2012-13: No Such Thing as an –Average– Year. CalCOFI Reports 54, 37-71 2013, . CCE LTER Contribution #0300 Download PDF

Di Lorenzo, E., D. Mountain, H.P. Batchelder, N.A. Bond, and E.E. Hofmann Advances in marine ecosystem dynamics from US GLOBEC: the horizontal-advection bottom-up forcing paradigm. Oceanography 26(4), 22-33 2013, DOI:10.5670/oceanog.2013.73. CCE LTER Contribution #0299 Journal Link

Subramanian, A. C., Miller, A. J., Cornuelle, B. D., Di Lorenzo, E., Weller, R. A., and Straneo, F. A data assimilative perspective of oceanic mesoscale eddy evolution during VOCALS-REx. Atmospheric Chemistry and Physics 13(6), 3329-3344 2013, DOI:10.5194/acp-13-3329-2013. CCE LTER Contribution #0298 Download PDF

Freeman, L. A., Kleypas, J. A., and Miller, A. J. Coral Reef Habitat Response to Climate Change Scenarios. PLoS ONE 8(12), e82404 2013, DOI:10.1371/journal.pone.0082404. CCE LTER Contribution #0297 Journal Link

Smith, Jr., K.L. , H.A. Ruhl, M. Kahru, C.L. Huffard, A.D. Sherman Deep ocean communities impacted by changing climate over 24 y in the abyssal northeast Pacific Ocean. Proceedings of the Natural Academy of Sciences 110(49), 19838-19841 2013, DOI:10.1073/pnas.1315447110. CCE LTER Contribution #0293 Download PDF

Di Lorenzo, E., V. Combes, J.E. Keister, P.T. Strub, A.C. Thomas, P.J.S. Franks, M.D. Ohman, J.C. Furtado, A. Bracco, S.J. Bograd, W.T. Peterson, F.B. Schwing, S. Chiba, B. Taguchi, S. Hormazabal, and C. Parada Synthesis of Pacific Ocean Climate and Ecosystem Dynamics. Oceanography 26(4), 68-81 2013, DOI:10.5670/oceanog.2013.76. CCE LTER Contribution #0286 Journal Link

Batchelder, H.P., K.L. Daly, C.S. Davis, R. Ji, M.D. Ohman, W.T. Peterson, and J.A. Runge Climate Impacts on Zooplankton Population Dynamics in Coastal Marine Ecosystems. Oceanography 26(4), 34-51 2013, DOI:10.5670/oceanog.2013.74. CCE LTER Contribution #0285 Journal Link

Chenillat F, Rivière P, Capet X, Franks P.J.S., and Blanke, B. California Coastal Upwelling Onset Variability: Cross-Shore and Bottom-Up Propagation in the Planktonic Ecosystem. PLoS ONE 8(5), e62281 2013, DOI:10.1371/journal.pone.0062281. CCE LTER Contribution #0281 Download PDF

Roe, K. L., S. L. Hogle, and K. A. Barbeau Utilization of heme as an iron source by marine Alphaproteobacteria in the Roseobacter clade. Applied and Environmental Microbiology 79(18), 5753-5762 2013, DOI:10.1128/AEM.01562-13. CCE LTER Contribution #0273 Download PDF

Goldstein, M. C., A. J. Titmus, and M. Ford Scales of spatial heterogeneity of plastic marine debris in the northeast Pacific Ocean. PLOS ONE 8(11), e80020 2013, DOI:10.1371/journal.pone.0080020. CCE LTER Contribution #0269 Download PDF

Goldstein, M.C. and D.S. Goodwin Gooseneck barnacles (Lepas spp.) ingest microplastic debris in the North Pacific Subtropical Gyre. Peer J 1, e184 2013, DOI:10.7717/peerj.184. CCE LTER Contribution #0268 Download PDF

Stukel, M.R., M.D. Ohman, C. Benitez-Nelson and M.R. Landry Mesozooplankton contribution to vertical carbon export in a coastal upwelling system. Mar. Ecol. Prog. Ser. 491, 47-65 2013, DOI:10.3354/meps10453. CCE LTER Contribution #0256 Download PDF

Dolan, J. R.,Landry, M. R.,Ritchie, M. E. The species-rich assemblages of tintinnids (marine planktonic protists) are structured by mouth size. ISME J 7(6), 1237-1243 2013, DOI:10.1038/ismej.2013.23. CCE LTER Contribution #0254 Journal Link

Goebel, N.L., C.A. Edwards, J.P. Zehr, M. Follows, and S.G. Morgan Modeled Phytoplankton Productivity and Diversity in the California Current System. Ecological Modeling 264(24), 37-47 2013, . CCE LTER Contribution #0253 Journal Link

Petrik, C. M.,Jackson, G. A.,Checkley Jr, D. M. Aggregates and their distributions determined from LOPC observations made using an autonomous profiling float. Deep Sea Research Part I: Oceanographic Research Papers 74(0), 64-81 2013, http://dx.doi.org/10.1016/j.dsr.2012.12.009 10.1016/j.dsr.2012.12.009. CCE LTER Contribution #0247 Journal Link

Stuart, R. K.,Brahamsha, B.,Busby, K.,Palenik, B. Genomic island genes in a coastal marine Synechococcus strain confer enhanced tolerance to copper and oxidative stress. The ISME Journal online, 1-11 2013, DOI:http://www.nature.com/ismej/journal/vaop/ncurrent/suppinfo/ismej2012175s1.html 10.1038/ismej.2012.175. CCE LTER Contribution #0245 Journal Link

Peloquin, J., C. Swan, N. Gruber, M. Vogt , H. Claustre, J. Ras, J. Uitz, R. Barlow, M. Behrenfeld, R. Bidigare, H. Dierssen, G. Ditullio, E. Fernandez, C. Gallienne, S. Gibb, R. Goericke, L. Harding, E. Head, P. Holligan, S. Hooker, D. Karl, M. Landry, R. Letelier, C. A. Llewellyn, M. Lomas, M. Lucas, A. Mannino, J.-C. Marty, B. G. Mitchell, F. Muller-Karger, N. Nelson, C. O'Brien, B. Prezelin, D. Repeta, W. O. Jr. Smith, D. Smythe-Wright, R. Stumpf, A. Subramaniam, K. Suzuki, C. Trees, M. Vernet, N. Wasmund, and S. Wright The MAREDAT global database of high performance liquid chromatography marine pigment measurements. Earth System Science Data 5, 109-123 2013, DOI:10.5194/essd-5-109-2013. CCE LTER Contribution #0244 Download PDF

Ohman, M. D., K. Barbeau, P. J. S. Franks, R. Goericke, M. R. Landry, and A. J. Miller Ecological Transitions in a Coastal Upwelling Ecosystem. Oceanography 26(3), 210-219 2013, DOI:10.5670/oceanog.2013.65. CCE LTER Contribution #0243 Journal Link

Ohman, M. D., D. L. Rudnick, A. Chekalyuk, R. E. Davis, R. A. Feely, M. Kahru, H. ?J. Kim, M. R. Landry, T. R. Martz, C. L. Sabine, and U. Send Autonomous Ocean Measurements in the California Current Ecosystem. Oceanography 26(3), 18-25 2013, http://dx.doi.org/. CCE LTER Contribution #0242 Journal Link

Davison, P., Checkley Jr., D.M., Koslow, J.A., Barlow, J. Carbon export mediated by mesopelagic fishes in the northeast Pacific Ocean. Progress in Oceanography 116, 14-30 2013, . CCE LTER Contribution #0234 Journal Link

Franks, P. J. S., E. Di Lorenzo, N. L. Goebel, F. Chenillat, P. Rivière, C. A. Edwards and A. J. Miller Modeling Physical-Biological Responses to Long-Term Climate Change in the California Current System. Oceanography 26(3), 26-33 2013, http://dx.doi.org/. CCE LTER Contribution #0233 Journal Link

Putrasahan, D. A.,Miller, A. J.,Seo, H. Regional coupled ocean–atmosphere downscaling in the Southeast Pacific: impacts on upwelling, mesoscale air–sea fluxes, and ocean eddies. Ocean Dynamics 63(5), 463-488 2013, DOI:10.1007/s10236-013-0608-2. CCE LTER Contribution #0232 Journal Link

Palacios, D. M., E. L. Hazen, I. Schroeder, and S. J. Bograd Modeling the temperature-nitrate relationship in the coastal upwelling domain of the California Current. Journal of Geophysical Research-Oceans 118, 1-17 2013, DOI:10.1002/jgrc.20216. CCE LTER Contribution #0231 Download PDF

Décima, M.,Landry, M. R.,Popp, B. N. Environmental perturbation effects on baseline delta-<sup>15</sup>N values and zooplankton trophic flexibility in the southern California Current Ecosystem. Limnology and Oceanography 58(2), 624-634 2013, DOI:10.4319/lo.2013.58.2.0624. CCE LTER Contribution #0230 Download PDF

Asch, R. G.,Checkley Jr., D. M. Dynamic height: A key variable for identifying the spawning habitat of small pelagic fishes. Deep Sea Research Part I: Oceanographic Research Papers 71(0), 79-91 2013, http://dx.doi.org/10.1016/j.dsr.2012.08.006. CCE LTER Contribution #0229 Journal Link

Di Lorenzo, E. and M. D. Ohman A double-integration hypothesis to explain ocean ecosystem response to climate forcing. Proceedings of the National Academy of Sciences 110(7), 2496-2499 2013, DOI:10.1073/pnas.1218022110. CCE LTER Contribution #0228 Journal Link

Sydeman, W.J., J.A. Santora, S.A. Thompson, B. Marinovic, and E.D. Di Lorenzo Increasing variance in North Pacific climate relates to unprecedented ecosystem variability off California. Global Change Biology 19(6), 1662 - 1675 2013, DOI:10.1111/gcb.12165. CCE LTER Contribution #0224 Download PDF

Whitney, F.A., Bograd, S.J., and Ono, T. Nutrient enrichment of the subarctic Pacific Ocean pycnocline. Geophysical Research Letters 40(10), 2200 - 2205 2013, DOI:10.1002/grl.50439. CCE LTER Contribution #0192 Download PDF

Wilson, S.E., Ruhl, H.A., and K.L. Smith, Jr. Seasonal and inter-annual contribution of zooplankton fecal pellets to carbon flux in the abyssal northeast Pacific. Limnology and Oceanography 58(3), 881-892 2013, DOI:10.4319/lo.2013.58.3.0881. CCE LTER Contribution #0191 Download PDF

Munro, D. R., Quay, P. D., Juranek, L. W., and Goericke, R. Biological production rates off the Southern California coast estimated from triple O2 isotopes and O2/Ar gas ratios. Limnology and Oceanography 58(4), 1312-1328 2013, DOI:10.4319/lo.2013.58.4.1312. CCE LTER Contribution #0160 Download PDF

Combes, V.,Chenillat, F.,Di Lorenzo, E.,Rivière, P.,Ohman, M. D.,Bograd, S. J. Cross-shore transport variability in the California Current: Ekman upwelling vs. eddy dynamics. Progress in Oceanography 109(0), 78-89 2013, http://dx.doi.org/10.1016/j.pocean.2012.10.001. CCE LTER Contribution #0150 Journal Link

Sydeman, W.J., Thompson, S.A., and Kitaysky, A. Seabirds and climate change: roadmap for the future. Marine Ecology Progress Series 454, 107-117 2012, DOI:10.3354/meps09806. CCE LTER Contribution #0280 Journal Link

Chenillat, F.,Rivière, P.,Capet, X.,Di Lorenzo, E.,Blanke, B. North Pacific Gyre Oscillation modulates seasonal timing and ecosystem functioning in the California Current upwelling system. Geophysical Research Letters 39(1), L01606 2012, DOI:10.1029/2011GL049966. CCE LTER Contribution #0279 Journal Link

Koslow, J. A., L. Rogers-Bennett, D.J. Neilson A time series of California spiny lobster (Panulirus interruptus) phyllosoma from 1951 to 2008 links abundance to warm oceanographic conditions in southern California. CalCOFI Reports 53, 132-139 2012, . CCE LTER Contribution #0278 Download PDF

Bjorkstedt, E.P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, W.T. Peterson, R. Brodeur, R.D. Brodeur, T. Auth, J. Fisher, C. Morgan, J. Peterson, J. Largier, S. Bograd, R. Durazo, G. Gaxiola-Castro, B. Lavaniegos, F.P. Chavez, C.A. Collins, B. Hannah, J. Field, K. Sakuma, W. Satterthwaite, M. O'Farrell, S. Hayes, J. Harding, W. Sydeman, S.A. Thompson, P. Warzybok, R. Bradley, J. Jahncke, R.T. Golightly, S.R. Schneider, R.M. Suryan, A.J. Gladics, C.A. Horton, S.Y. Kim, S.R. Melin, R.L. Delong, and J. Abell State of the California Current 2011-2012: Ecosystems respond to local forcing as La Niña wavers and wanes. CalCOFI Reports 53, 41-76 2012, . CCE LTER Contribution #0276 Download PDF

Alin, S. R.,Feely, R. A.,Dickson, A. G.,Hernández-Ayón, J. M.,Juranek, L. W.,Ohman, M. D.,Goericke, R. Robust empirical relationships for estimating the carbonate system in the southern California Current System and application to CalCOFI hydrographic cruise data (2005–2011). Journal of Geophysical Research: Oceans 117(C5), C05033 2012, DOI:10.1029/2011JC007511. CCE LTER Contribution #0270 Journal Link

Lévy, M.,Ferrari, R.,Franks, P. J. S.,Martin, A. P.,Rivière, P. Bringing physics to life at the submesoscale. Geophysical Research Letters 39(14), L14602 2012, DOI:10.1029/2012GL052756. CCE LTER Contribution #0248 Journal Link

Ohman, M. D., J. R. Powell, M. Picheral, and D. W. Jensen Mesozooplankton and particulate matter responses to a deep-water frontal system in the southern California Current System. Journal of Plankton Research 34(9), 815-827 2012, DOI:10.1093/plankt/fbs028. CCE LTER Contribution #0222 Download PDF

Kahru, M.,Kudela, R.l M.,Manzano-Sarabia, M.,Mitchell, B. G. Trends in the surface chlorophyll of the California Current: Merging data from multiple ocean color satellites. Deep-Sea Research Part II 7780(0), 89-98 2012, http://dx.doi.org/10.1016/j.dsr2.2012.04.007. CCE LTER Contribution #0219 Journal Link

Kahru, M.,Di Lorenzo, E.,Manzano-Sarabia, M.,Mitchell, B. G. Spatial and temporal statistics of sea surface temperature and chlorophyll fronts in the California Current. Journal of Plankton Research 34(9), 749-760 2012, DOI:10.1093/plankt/fbs010. CCE LTER Contribution #0218 Journal Link

Lara-Lopez, A. L.,Davison, P.,Koslow, J. A. Abundance and community composition of micronekton across a front off Southern California. Journal of Plankton Research 34(9), 828-848 2012, DOI:10.1093/plankt/fbs016. CCE LTER Contribution #0216 Journal Link

Taniguchi, D.A.A., P.J.S. Franks and M.R. Landry Estimating size-dependent growth and grazing rates and their associate error using the dilution method. Limnology and Oceanography: Methods 10, 868-881 2012, DOI:10.4319/lom.2012.10.868. CCE LTER Contribution #0212 Download PDF

Samo, T., B. Pedler, I. Ball, A.L. Pasulka, A.G. Taylor, L.I. Aluwihare, F. Azam, R. Goericke and M.R. Landry Enhanced responses of heterotrophic bacteria at water mass frontal zones in the California Current Ecosystem.. Journal of Plankton Research 34(9), 802-814 2012, DOI:10.1093/plankt/fbs048. CCE LTER Contribution #0211 Download PDF

Li, Q. P.,Franks, P. J. S.,Ohman, M. D.,Landry, M. R. Enhanced nitrate fluxes and biological processes at a frontal zone in the southern California current system. Journal of Plankton Research 34(9), 790-801 2012, DOI:10.1093/plankt/fbs006. CCE LTER Contribution #0210 Journal Link

Chekalyuk, A. M.,Landry, M. R.,Goericke, R.,Taylor, A. G.,Hafez, M. A. Laser fluorescence analysis of phytoplankton across a frontal zone in the California Current ecosystem. Journal of Plankton Research 34(9), 761-777 2012, DOI:10.1093/plankt/fbs034. CCE LTER Contribution #0209 Journal Link

Taylor, A.G., R. Goericke, M.R. Landry, K.E. Selph, D.A. Wick and M.J. Roadman Sharp gradients in phytoplankton community structure across a frontal zone in the California Current Ecosystem. Journal of Plankton Research 34(9), 778-789 2012, DOI:10.1093/plankt/fbs036. CCE LTER Contribution #0208 Download PDF

Landry, M. R.,Ohman, M. D.,Goericke, R.,Stukel, M. R.,Barbeau, K. A.,Bundy, R.M.,Kahru, M. Pelagic community responses to a deep-water front in the California Current Ecosystem: overview of the A-Front Study. Journal of Plankton Research 34(9), 739-748 2012, DOI:10.1093/plankt/fbs025. CCE LTER Contribution #0207 Journal Link

Goldstein, M. C.,Rosenberg, M.,Cheng, L. Increased oceanic microplastic debris enhances oviposition in an endemic pelagic insect. Biology Letters 8(5), 817-820 2012, DOI:10.1098/rsbl.2012.0298. CCE LTER Contribution #0206 Journal Link

Chen, B., M. R. Landry, B. Huang and H. Liu Does warming enhance the effect of microzooplankton grazing on marine phytoplankton in the ocean?. Limnology and Oceanography 57(2), 519-526 2012, DOI:10.4319/lo.2012.57.2.0519. CCE LTER Contribution #0205 Download PDF

Suryan, R. M.,Santora, J. A.,Sydeman, W. J. New approach for using remotely sensed chlorophyll a to identify seabird hotspots. Marine Ecology Progress Series 451, 213-225 2012, DOI:10.3354/meps09597. CCE LTER Contribution #0204 Journal Link

Bargu, S.,Silver, M. W.,Ohman, M. D.,Benitez-Nelson, C. R.,Garrison, D. L. Mystery behind Hitchcock's birds. Nature Geoscience 5(1), 2-3 2012, DOI:10.1038/ngeo1360. CCE LTER Contribution #0198 Journal Link

King, A. L.,Buck, K. N.,Barbeau, K. A. Quasi-Lagrangian drifter studies of iron speciation and cycling off Point Conception, California. Marine Chemistry 128-129, 1-12 2012, DOI:10.1016/j.marchem.2011.11.001. CCE LTER Contribution #0197 Journal Link

Ohman, M. D.,Rau, G. H.,Hull, P. M. Multi-decadal variations in stable N isotopes of California Current zooplankton. Deep Sea Research Part I: Oceanographic Research Papers 60(0), 46-55 2012, DOI:10.1016/j.dsr.2011.11.003 (2012). CCE LTER Contribution #0196 Journal Link

Ohman, M. D. Estimation of mortality for stage-structured zooplankton populations: What is to be done?. Journal of Marine Systems 93(0), 4-10 2012, . CCE LTER Contribution #0195 Journal Link

Thompson, S.A.,Sydeman, W.J.,Santora, J.A.,Black, B.A.,Suryan, R.M.,Calambokidis, J.,Peterson, W.T.,Bograd, S.J. Linking predators to seasonality of upwelling: Using food web indicators and path analysis to infer trophic connections. Progress in Oceanography 101(1), 106-120 2012, . CCE LTER Contribution #0194 Journal Link

Booth, J. A. T.,McPhee-Shaw, E. E.,Chua, P.,Kingsley, E.,Denny, M.,Phillips, R.,Bograd, S. J.,Zeidberg, L. D.,Gilly, W. F. Natural intrusions of hypoxic, low pH water into nearshore marine environments on the California coast. Continental Shelf Research 45(0), 108-115 2012, http://dx.doi.org/10.1016/j.csr.2012.06.009. CCE LTER Contribution #0193 Journal Link

Zhang, J.,Fleming, J.,Goericke, R. Fishermen's perspectives on climate variability. Marine Policy 36(2), 466-472 2012, DOI:10.1016/j.marpol.2011.06.001. CCE LTER Contribution #0190 Journal Link

Freeman, L. A.,Miller, A. J.,Norris, R. D.,Smith, J. E. Classification of remote Pacific coral reefs by physical oceanographic environment. Journal of Geophysical Research - Oceans 117(C2), C02007 2012, DOI:10.1029/2011jc007099. CCE LTER Contribution #0189 Journal Link

Song, H.,Miller, A. J.,McClatchie, S.,Weber, E. D.,Nieto, K. M.,Checkley Jr., D. M. Application of a data-assimilation model to variability of Pacific sardine spawning and survivor habitats with ENSO in the California Current System. Journal of Geophysical Research 117(C3), C03009 2012, DOI:10.1029/2011jc007302. CCE LTER Contribution #0188 Journal Link

Gleason, L. U.,Burton, R. S. High-throughput molecular identification of fish eggs using multiplex suspension bead arrays. Molecular Ecology Resources 12, 57-66 2012, DOI:10.1111/j.1755-0998.2011.03059.x. CCE LTER Contribution #0184 Journal Link

Macías, D.,Landry, M. R.,Gershunov, A.,Miller, A. J.,Franks, P. J. S. Climatic control of upwelling variability along the western North-American coast. PLoS ONE 7(1), 13 2012, DOI:10.1371/journal.pone.0030436. CCE LTER Contribution #0183 Journal Link

Macías, D.,Franks, P. J. S.,Ohman, M. D.,Landry, M. R. Modeling the effects of coastal wind- and wind-stress curl-driven upwellings on plankton dynamics in the Southern California current system. Journal of Marine Systems 94(0), 107-119 2012, . CCE LTER Contribution #0182 Journal Link

Linacre, L. P., M. R. Landry, R. Cajal-Medrano, J. R. Lara-Lara, J. M. Hernández-Ayón, R. R., Mouriño-Pérez, E. García-Mendoza and C. Bazán-Guzmán Temporal dynamics of carbon flow through the microbial plankton community in a coastal upwelling system off northern Baja California, Mexico. Marine Ecology Progress Series 461, 31-46 2012, DOI:10.3354/meps09782. CCE LTER Contribution #0181 Journal Link

Stukel, M. R.,Landry, M. R.,Ohman, M. D.,Goericke, R.,Samo, T.,Benitez-Nelson, C. R. Do inverse ecosystem models accurately reconstruct plankton trophic flows? Comparing two solution methods using field data from the California Current. Journal of Marine Systems 91(1), 20-33 2012, DOI:10.1016/j.jmarsys.2011.09.004. CCE LTER Contribution #0180 Journal Link

Hazen, E.L., W.J. Sydeman, I.D. Schroeder, S.A. Thompson, B.K. Wells, S.T. Lindley, C.B. Grimes, S.J. Bograd, and F.B. Schwing Status of the California Current Ecosystem: Major ecosystem based management drivers and pressures in Technical background for an integrated ecosystem assessment of the California Current: Groundfish, salmon, green sturgeon, and ecosystem health. NOAA Technical Memorandum NMFS-NWFSC-109, 99-110 2011, . CCE LTER Contribution #0221 Download PDF

Bjorkstedt, E.P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, R. Brodeur, J. Peterson, M. Litz, J. Gomez-Valdez, G. Gaxiola-Castro, B. Lavaniegos, F. Chavez, C.A., Collins, J. Field, K. Sakuma, P. Warzybok, R. Bradley, J. Jahncke, S. Bograd, F. Schwing, G.S. Campbell, J. Hildebrand, W. Sydeman, S.A. Thompson, J. Largier, C. Halle, S.Y. Kim, and J. Abell State of the California Current 2010-2011: Regionally variable responses to a strong (but fleeting?) La Niña. CalCOFI Reports 52, 36-68 2011, . CCE LTER Contribution #0220 Download PDF

Koslow, J.A., R. Goericke, A. Lara-Lopez, and W. Watson Impact of declining intermediate-water oxygen on deepwater fishes in the California Current. Marine Ecology Progress Series 436, 207-218 2011, DOI:10.3354/meps09270. CCE LTER Contribution #0217 Journal Link

Davison, P. The specific gravity of mesopelagic fish from the northeastern Pacific Ocean and its implications for acoustic backscatter. ICES Journal of Marine Science: Journal du Conseil 68(10), 2064-2074 2011, DOI:10.1093/icesjms/fsr140. CCE LTER Contribution #0215 Journal Link

Goericke, R. The Size Structure of Marine Phytoplankton – What Are the Rules?. CalCOFI Reports 52, 198-204 2011, . CCE LTER Contribution #0214 Download PDF

Goericke, R. The Structure of Marine Phytoplankton Communities – Patterns, Rules and Mechanisms. CalCOFI Reports 52, 182-197 2011, . CCE LTER Contribution #0213 Download PDF

Hofmann, G. E.,Smith, J. E.,Johnson, K. S.,Send, U.,Levin, L. A.,Micheli, F.,Paytan, A.,Price, N. N.,Peterson, B.,Takeshita, Y.,Matson, P. G.,Crook, E. D.,Kroeker, K. J.,Gambi, M. C.,Rivest, E. B.,Frieder, C. A.,Yu, P. C.,Martz, T. R. High-Frequency Dynamics of Ocean pH: A Multi-Ecosystem Comparison. PLoS ONE 6(12), e28983 2011, . CCE LTER Contribution #0201 Journal Link

Bestelmeyer, B.T.,Ellison, A.M.,Fraser.W.R.,Gorman, K. B.,Holbrooke, S. J.,Laney, C. M.,Ohman, M.D.,Peters, D.P.C.,Pillsbury, F.C.,Rassweiler, A.,Schmitt, R.J.,Sharmai, S. Analysis of abrupt transitions in ecological systems. Ecosphere 2(12):129, 1-26 2011, DOI:10.1890/ES11-00216.1. CCE LTER Contribution #0199 Download PDF

Song, H.,Miller, A. J.,Cornuelle, B. D.,Di Lorenzo, E. Changes in upwelling and its water sources in the California Current System driven by different wind forcing. Dynamics of Atmospheres and Oceans 52(1-2), 170-191 2011, . CCE LTER Contribution #0186 Journal Link

Bromirski, P. D.,Miller, A. J.,Flick, R. E.,Auad, G. Dynamical suppression of sea level rise along the Pacific coast of North America: Indications for imminent acceleration. J. Geophys. Res. 116(C7), C07005 2011, DOI:10.1029/2010jc006759. CCE LTER Contribution #0185 Journal Link

Stukel, M. R.,Landry, M. R.,Benitez-Nelson, C. R.,Goericke, R. Trophic cycling and carbon export relationships in the California Current Ecosystem. Limnology and Oceanography 56(5), 1866-1878 2011, DOI:10.4319/lo.2011.56.5.1866. CCE LTER Contribution #0179 Download PDF

Sydeman, W. J.,Thompson, S. A.,Field, J. C.,Peterson, W. T.,Tanasichuk, R. W.,Freeland, H. J.,Bograd, S. J.,Rykaczewski, R, R. Does positioning of the North Pacific Current affect downstream ecosystem productivity?. Geophys. Res. Lett. 38(12), L12606 2011, DOI:10.1029/2011gl047212. CCE LTER Contribution #0178 Journal Link

Mazzillo, F.F.M.,Staaf, D.J.,Field, J.C.,Carter, M.L.,Ohman, M.D. A note on the detection of the neurotoxin domoic acid in beach-stranded Dosidicus gigas in the Southern California Bight. CalCOFI Reports 52, 109-115 2011, . CCE LTER Contribution #0173 Download PDF

Todd, R. E.,Rudnick, D. L.,Davis, R. E.,Ohman, M. D. Underwater gliders reveal rapid arrival of El Niño effects off California's coast. Geophys. Res. Lett. 38(3), L03609 2011, DOI:10.1029/2010gl046376. CCE LTER Contribution #0172 Journal Link

Li, Q. P.,Franks, P. J. S.,Landry, M. R. Microzooplankton grazing dynamics: parameterizing grazing models with dilution experiment data from the California Current Ecosystem. Marine Ecology Progress Series 438, 59-69 2011, DOI:10.3354/meps09320. CCE LTER Contribution #0171 Journal Link

Black, B. A.,Schroeder, I. D.,Sydeman, W. J.,Bograd, S. J.,Wells, B. K.,Schwing, F. B. Winter and summer upwelling modes and their biological importance in the California Current Ecosystem. Global Change Biology 17(8), 2536-2545 2011, DOI:10.1111/j.1365-2486.2011.02422.x. CCE LTER Contribution #0170 Journal Link

Tai, V.,Burton, R.S.,Palenik, B. Temporal and spatial distributions of marine Synechococcus in the Southern California Bight assessed by hybridization to bead-arrays. Marine Ecology Progress Series 426, 133-147 2011, DOI:10.3354/meps09030. CCE LTER Contribution #0169 Journal Link

Dorman, J.G.,Powell, T.M.,Sydeman, W.J.,Bograd, S.J. Advection and starvation cause krill (Euphausia pacifica) decreases in 2005 Northern California coastal populations: Implications from a model study. Geophysical Research Letters 38(4), L04605 2011, . CCE LTER Contribution #0168 Download PDF

Jackson, G.A.,Checkley Jr, D.M. Particle size distributions in the upper 100 m water column and their implications for animal feeding in the plankton. Deep Sea Research Part I: Oceanographic Research Papers 58, 283-297 2011, . CCE LTER Contribution #0167 Download PDF

Taylor, A. G.,Landry, M. R.,Selph, K. E.,Yang, E. J. Biomass, size structure and depth distributions of the microbial community in the eastern equatorial Pacific. Deep Sea Research Part II: Topical Studies in Oceanography 58(3-4), 342-357 2011, . CCE LTER Contribution #0165 Journal Link

Kilpatrick, T.,Schneider, N.,Di Lorenzo, E. Generation of Low-Frequency Spiciness Variability in the Thermocline*. Journal of Physical Oceanography 41(2), 365-377 2011, DOI:10.1175/2010jpo4443.1. CCE LTER Contribution #0151 Journal Link

Décima, M.,Landry, M. R.,Rykaczewski, R. R. Broad scale patterns in mesozooplankton biomass and grazing in the eastern equatorial Pacific. Deep Sea Research Part II: Topical Studies in Oceanography 58(3-4), 387-399 2011, . CCE LTER Contribution #0131 Journal Link

King, A.L.,Barbeau, K.A. Dissolved iron and macronutrient distributions in the southern California Current System. Journal of Geophysical Research 116(C3), C03018 2011, . CCE LTER Contribution #0055 Download PDF

Bjorkstedt, E.P., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, B. Peterson, B. Emmett, J. Peterson, R. Durazo, G. Gaxiola-Castro, F. Chavez, J.T. Pennington, C.A. Collins, J. Field, S. Ralston, K. Sakuma, S. Bograd, F. B. Schwing, Y. Xue, W.J. Sydeman, S.A. Thompson, J.A. Santora, J.Largier, C. Halle, S. Morgan, S.Y. Kim, K.P.B. Merkens, J.A. Hildebrand, and L.M. Munger State of the California Current 2009-2010: Regional variation persists through transition from La Niña to El Niño (and back?). CalCOFI Reports 51, 39-69 2010, . CCE LTER Contribution #0257 Download PDF

Yeh, S. -W.,Kang, Y. -J.,Noh, Y.,Miller, A. J. The North Pacific Climate Transitions of the Winters of 1976/77 and 1988/89. Journal of Climate 24(4), 1170-1183 2010, DOI:10.1175/2010jcli3325.1. CCE LTER Contribution #0187 Journal Link

McClatchie, S.,Goericke, R.,Cosgrove, R.,Auad, G.,Vetter, R. Oxygen in the Southern California Bight: Multidecadal trends and implications for demersal fisheries. Geophysical Research Letters 37, L19602 2010, DOI:10.1029/2010gl044497. CCE LTER Contribution #0164 ISI:000282433000006 Journal Link

Karasti, H.,Baker, K. S.,Millerand, F. Infrastructure Time: Long-term Matters in Collaborative Development. Computer Supported Cooperative Work-the Journal of Collaborative Computing 19(3-4), 377-415 2010, DOI:10.1007/s10606-010-9113-z. CCE LTER Contribution #0163 ISI:000282318300007 Journal Link

Schartau, M.,Landry, M.R.,Armstrong, R.A. Density estimation of plankton size spectra: a reanalysis of IronEx II data. Journal of Plankton Research 32(8), 1167 2010, . CCE LTER Contribution #0159 Download PDF

Kahru, M.,Gille, S. T.,Murtugudde, R.,Strutton, P. G.,Manzano-Sarabia, M.,Wang, H.,Mitchell, B. G. Global correlations between winds and ocean chlorophyll. J. Geophys. Res. 115(C12), C12040 2010, DOI:10.1029/2010jc006500. CCE LTER Contribution #0154 Journal Link

Black, B. A.,Schroeder, I. D.,Sydeman, W. J.,Bograd, S. J.,Lawson, P. W. Wintertime ocean conditions synchronize rockfish growth and seabird reproduction in the central California Current ecosystem. Canadian Journal of Fisheries and Aquatic Sciences 67(7), 1149-1158 2010, DOI:10.1139/f10-055. CCE LTER Contribution #0152 ISI:000279739900009 Journal Link

Aronova, E.,Baker, K.,Oreskes, N. Big Science and Big Data in Biology: From the International Geophysical Year through the International Biological Program to the Long Term Ecological Research (LTER) Network, 1957-Present. Historical Studies in the Natural Sciences 40(2), 183-224 2010, DOI:10.1525/hsns.2010.40.2.183. CCE LTER Contribution #0145 Download PDF

Goetze, E.,Ohman, M. D. Integrated molecular and morphological biogeography of the calanoid copepod family Eucalanidae. Deep Sea Research Part II: Topical Studies in Oceanography 57(24-26), 2110-2129 2010, . CCE LTER Contribution #0142 Journal Link

Gorsky, G.,Ohman, M.D.,Picheral, M.,Gasparini, S.,Stemmann, L.,Romagnan, J.B.,Cawood, A.,Pesant, S.,García-Comas, C.,Prejger, F. Digital zooplankton image analysis using the ZooScan integrated system. Journal of Plankton Research 32(3), 285 2010, . CCE LTER Contribution #0141 Download PDF

Wolf, S. G.,Snyder, M. A.,Sydeman, W. J.,Doak, D. F.,Croll, D. A. Predicting population consequences of ocean climate change for an ecosystem sentinel, the seabird Cassin's auklet. Global Change Biology 16(7), 1923-1935 2010, DOI:10.1111/j.1365-2486.2010.02194.x. CCE LTER Contribution #0137 ISI:000278308100003 Journal Link

Schwing, F. B.,Mendelssohn, R. M.,Bograd, S. J.,Overland, J. E.,Wang, M.,Ito, S. I. Climate change, teleconnection patterns, and regional processes forcing marine populations in the Pacific. Journal of Marine Systems 79, 245-257 2010, DOI:10.1016/j.jmarsys.2008.11.027. CCE LTER Contribution #0135 Download PDF

Décima, M.,Ohman, M. D.,DeRobertis, A. Body size-dependence of euphausiid spatial patchiness. Limnology and Oceanography 55(2), 777-788 2010, . CCE LTER Contribution #0130 Download PDF

Poulin, F. J.,Franks, P. J. S. Size-structured planktonic ecosystems: constraints, controls and assembly instructions. Journal of Plankton Research 32(8), 1121-1130 2010, DOI:10.1093/plankt/fbp145. CCE LTER Contribution #0127 ISI:000280562300003 Journal Link

Linacre, L. P.,Landry, M. R.,Lara-Lara, J. R.,Hernandez-Ayon, J. M.,Bazan-Guzman, C. Picoplankton dynamics during contrasting seasonal oceanographic conditions in a coastal upwelling station off Northern Baja California, México. Journal of Plankton Research 32(4), 539-557 2010, DOI:10.1093/plankt/fbp148. CCE LTER Contribution #0123 Download PDF

Hereu, C. M.,Lavaniegos, B. E.,Goericke, R. Grazing impact of salp (Tunicata, Thaliacea) assemblages in the eastern tropical North Pacific. Journal of Plankton Research 32(6), 785-804 2010, DOI:10.1093/plankt/fbq005. CCE LTER Contribution #0113 Download PDF

Landry, M.R.,Selph, K.E.,Taylor, A.G.,Décima, M.,Balch, W.M.,Bidigare, R.R. Phytoplankton growth, grazing and production balances in the HNLC equatorial Pacific. Deep Sea Research Part II: Topical Studies in Oceanography , 2010, . CCE LTER Contribution #0109 Download PDF

Di Lorenzo, E.,Cobb, KM,Furtado, JC,Schneider, N.,Anderson, BT,Bracco, A.,Alexander, MA,Vimont, DJ Central Pacific El Niño and decadal climate change in the North Pacific Ocean. Nature Geoscience 3(11), 762-765 2010, . CCE LTER Contribution #0108 Download PDF

Li, Q. P.,Franks, P. J. S.,Landry, M. R.,Goericke, R.,Taylor, A. G. Modeling phytoplankton growth rates and chlorophyll to carbon ratios in California coastal and pelagic ecosystems. Journal of Geophysical Research 115, G04003 2010, DOI:10.1029/2009jg001111. CCE LTER Contribution #0105 ISI:000282768500001 Journal Link

Dupont, C. L.,Buck, K. N.,Palenik, B.,Barbeau, K. Nickel utilization in phytoplankton assemblages from contrasting oceanic regimes. Deep-Sea Research Part I 57(4), 553-566 2010, DOI:10.1016/j.dsr.2009.12.014. CCE LTER Contribution #0098 Download PDF

Fuchs, H. L.,Franks, P. J. S. Plankton community properties determined by nutrients and size-selective feeding. Marine Ecology-Progress Series 413, 1-15 2010, DOI:10.3354/meps08716. CCE LTER Contribution #0097 ISI:000281566900001 Journal Link

McClatchie, S,Goericke, R,Auad, G,Hill, K Re-assessment of the stock-recruit and temperature-recruit relationships for Pacific sardine (Sardinops sagax). Canadian Journal of Fisheries and Aquatic Sciences 67, 1782-1790 2010, DOI:10.1139/F10-101. CCE LTER Contribution #0067 Download PDF

Millerand, F.,Baker, K. S. Who are the users? From a single user to a web of users in the design of a working standard. Information Systems Journal 20, 137-161 2010, DOI:10.1111/j.1365-2575.2009.00338.x. CCE LTER Contribution #0049 Download PDF

Ohman, M. D.,Lavaniegos, B. E.,Townsend, A. W. Multi-decadal variations in calcareous holozooplankton in the California Current System: Thecosome pteropods, heteropods, and foraminifera. Geophysical Research Letters 36, L18608 2009, DOI:L18608 10.1029/2009gl039901. CCE LTER Contribution #0161 ISI:000270235000004 Journal Link

McClatchie, S.,Goericke, R.,Schwing, F. B.,Bograd, S. B.,Peterson, W.,Emmett, R.,Charter, R.,Watson, W.,Lo, N.,Hill, K.,Collins, C.,Kahru, M.,Mitchell, B. G.,Koslow, J. A.,Gomes-Valdes, J.,Lavaniegos, B. E.,Gaxiola-Castro, G.,Gottschalck, J.,L'Heureux, M.,Xue, Y.,Manzano-Sarabia, M.,Bjorkstedt, E.,Ralston, S.,Field, J.,Rogers-Bennet, L.,Munger, L.,Campbell, G.,Merkens, K.,Camacho, D.,Havron, A.,Douglas, A.,Hildebrand, J. The State of the California Current, Spring 2008-2009: Cold conditions drive regional differences in coastal production. CalCOFI Reports 50, 43-68 2009, . CCE LTER Contribution #0143 Download PDF

Wolf, S. G.,Sydeman, W. J.,Abraham, C. L.,Hipfner, J. M.,Tershy, B.,Croll, D. Range-wide reproductive consequences of climate variability for the seabird Cassin–s Auklet Ptychoramphus aleuticus. Ecology 90(3), 742-753 2009, . CCE LTER Contribution #0138 Download PDF

Sydeman, W. J.,Bograd, S. J. Marine ecosystems, climate and phenology: Introduction. Marine Ecology Progress Series 393, 185-188 2009, DOI:10.3354/meps08382. CCE LTER Contribution #0136 Download PDF

Mitchell, B. G.,Kahru, M. Bio-optical algorithms for ADEOS-2 GLI. Journal of the Remote Sensing Society of Japan 29(1), 80-85 2009, . CCE LTER Contribution #0134 Download PDF

Tai, V.,Palenik, B. Temporal variation of Synechococcus clades at a coastal Pacific Ocean monitoring site. The ISME Journal 3, 903-915 2009, DOI:10.1038/ismej.2009.35. CCE LTER Contribution #0132 Download PDF

Smith, Jr., K. L.,Ruhl, H. A.,Betts, B. J.,Billett, D. S. M.,Lampitt, R. S.,Kaufmann, R. S. Climate, carbon cycling and deep-ocean ecosystems. Proceedings of the Natural Academy of Sciences 106(46), 19211-19218 2009, DOI:1073/pnas.0908322106. CCE LTER Contribution #0129 Download PDF

Holland, N. D.,Jones, W. J.,Ellena, J.,Ruhl, H. A.,Smith, Jr., K. L. A new deep-sea species of epibenthic acorn worm (Hemichordata, Enteropneusta). Zoosystema 31(2), 333-346 2009, . CCE LTER Contribution #0128 Download PDF

Menge, Bruce A.,Chan, Francis,Nielsen, Karina,Di Lorenzo, Emanuele,Lubchenco, Jane Climatic variation alters supply-side ecology: impact of climate patterns on phytoplankton and mussel recruitment. Ecological Monographs 79(3), 379-395 2009, . CCE LTER Contribution #0126 Download PDF

Porter, J. H.,Nagy, E.,Kratz, T. K.,Hanson, P.,Collins, S. L.,Arzberger, P. New eyes on the world: advanced sensors for ecology. BioScience 59, 385-397 2009, . CCE LTER Contribution #0125 Download PDF

Gilfillan, L. R.,Ohman, M. D.,Doyle, M. J.,Watson, W. Occurrence of plastic micro-debris in the southern California Current System. California Cooperative Oceanic Fisheries Investigations Reports 50, 123-133 2009, . CCE LTER Contribution #0124 Download PDF

Aksnes, D. L.,Ohman, M. D. Multi-decadal shoaling of the euphotic zone in the southern sector of the California Current System. Limnology and Oceanography 54(4), 1272-1281 2009, . CCE LTER Contribution #0114 Download PDF

Landry, M. R.,Ohman, M. D.,Goericke, R.,Stukel, M. R.,Tsyrklevich, K. Lagrangian studies of phytoplankton growth and grazing relationships in a coastal upwelling ecosystem off Southern California. Progress in Oceanography 83, 208-216 2009, DOI:10.1016/j.pocean.2009.07.026. CCE LTER Contribution #0110 Download PDF

Hannides, C. C. S.,Popp, B. N.,Landry, M. R.,Graham, B. S. Quantification of zooplankton trophic position in the North Pacific Subtropical Gyre using stable nitrogen isotopes. Limnology and Oceanography 54(1), 50-61 2009, . CCE LTER Contribution #0107 Download PDF

Fiechter, J.,Moore, A. M.,Edwards, C. A.,Bruland, K. W.,Di Lorenzo, E.,Lewis, C. V. W.,Powell, T. M.,Curchitser, E. N.,Hedstrom, K. Modeling iron limitation on primary production in the coastal Gulf of Alaska. Deep-Sea Research II 56, 2503-2519 2009, DOI:10.1016/j.dsr2.2009.02.010. CCE LTER Contribution #0102 Download PDF

Ceballos, L.,Di Lorenzo, E.,Schneider, N.,Taguchi, B.,Hoyas, C. D. North Pacific Gyre Oscillation synchronizes climate fluctuations in the eastern and western North Pacific. Journal of Climate 22, 5163-5174 2009, DOI:10.1175/2009jcli2848.1. CCE LTER Contribution #0101 Download PDF

Sydeman, W. J.,Mills, K. L.,Thompson, S. A.,Santora, J. A.,Bertram, D. F.,Morgan, K. H.,Hipfner, M. A.,Wells, B. K.,Wolf, S. G. Seabirds and climate in the California Current - a synthesis of change. California Cooperative Oceanic Fisheries Investigation Reports 50, 82-107 2009, . CCE LTER Contribution #0100 Download PDF

Baker, K,Yarmey, L Data Stewardship: Environmental Data Curation and a Web-of-Repositories. International Journal of Digital Curation 4(2), 2009, . CCE LTER Contribution #0099 Download PDF

Chhak, K.,Di Lorenzo, E.,Schneider, N.,Cummins, P. Forcing of low-frequency ocean variability in the Northeast Pacific. Journal of Climate 22(5), 1255-1276 2009, DOI:10.1175/2008jcli2639.1. CCE LTER Contribution #0096 Download PDF

Schroeder, I. D.,Sydeman, W. J.,Sarkar, N.,Bograd, S. J.,Schwing, F. B.,Thompson, S. A. Winter pre-conditioning of seabird phenology in the California Current. Marine Ecology Progress Series 393, 211-223 2009, DOI:10.3354/meps08103. CCE LTER Contribution #0095 Download PDF

Di Lorenzo, E. J.,Fiechter, J.,Schneider, N.,Bracco, A.,Miller, A. J.,Franks, P. J. S.,Bograd, S. J.,Moore, A. M.,Thomas, A. C.,Crawford, W. J.,Peña, A.,Hermann, A. Nutrient and salinity decadal variations in the central and eastern North Pacific. Geophysical Research Letters 36, L14601 2009, DOI:10.1029/2009gl038261. CCE LTER Contribution #0094 Download PDF

Bograd, S. J.,Schroeder, I.,Sarkar, N.,Qiu, X.,Sydeman, W. J.,Schwing, F. B. The phenology of coastal upwelling in the California Current. Geophysical Research Letters 36, L01602 2009, DOI:10.1029/2008gl035933. CCE LTER Contribution #0093 Download PDF

Vardaro, M F.,Ruhl, H A.,Smith, Jr., K L. Climate variation, carbon flux, and bioturbation in the abyssal North Pacific. Limnology and Oceanography 54(6), 2081-2088 2009, . CCE LTER Contribution #0090 Download PDF

Sherman, A D.,Smith, Jr., K L. Deep-sea benthic boundary layer communities and food supply: a long-term monitoring strategy. Deep-Sea Research II 56(19-20), 1754-1762 2009, DOI:10.1016/j.dsr2.2009.05.020. CCE LTER Contribution #0089 Download PDF

McGill, P R.,Sherman, A D.,Hobson, B W.,Henthorn, R G.,Smith, Jr., K L. Initial deployments of the Rover, an autonomous bottom-transecting instrument platform. Journal of Ocean Technology 4(2), 54-70 2009, . CCE LTER Contribution #0088 Download PDF

Hsieh, C. -H.,Kim, H. -J.,Watson, W.,Di Lorenzo, E.,Sugihara, G. Climate-driven changes in abundance and distribution of larvae of oceanic fishes in the southern California region. Global Change Biology 15, 2137-2152 2009, DOI:10.1111/j.1365-2486.2009.01875.x. CCE LTER Contribution #0085 Download PDF

Kahru, M.,Kudela, R.,Manzano-Sarabia, M.,Mitchell, B. G. Trends in primary production in the California Current detected with satellite data. Journal of Geophysical Research 114(C02004), 7 pgs 2009, DOI:10.1029/2008jc004979. CCE LTER Contribution #0077 Download PDF

Kim, H. -J.,Miller, A. J.,McGowan, J.,Carter, M. Coastal phytoplankton blooms in the Southern California Bight. Progress in Oceanography 82, 137-147 2009, DOI:10.1016/j.pocean.2009.05.002. CCE LTER Contribution #0064 Download PDF

Karasti, H.,Baker, K. Digital Data Practices and the Global Long Term Ecological Research Program. International Journal of Digital Curation 3(2), 42-58 2008, . CCE LTER Contribution #0146 Download PDF

McClatchie, S.,Goericke, R.,Koslow, J. A.,Schwing, F. B.,Bograd, S. J.,Charter, R.,Watson, W.,Lo, N.,Hill, K.,Gottschalk, J.,L'Heureux, M.,Xue, Y.,Peterson, W. T.,Emmett, R.,Collins, C.,Gaxiola-Castro, G.,Durazo, R.,Kahru, M.,Mitchell, B. G.,Hyrenbach, K. D.,Sydeman, W. J.,Bradley, R. W.,Warzybok, P.,Bjorkstedt, E. The State of the California Current, 2007-2008: La Nina Conditions and their Effects on the Ecosystem. CalCOFI Reports 49, 39-76 2008, . CCE LTER Contribution #0112 Download PDF

Hannides, C. C. S.,Landry, M. R.,Benitez-Nelson, C. R.,Styles, R. M.,Montoya, J. P.,Karl, D. M. Export stoichiometry and migrant-mediated flux of phosphorus in the North Pacific Subtropical Gyre. Deep-Sea Research I 56, 73-88 2008, DOI:10.1016/j.dsr.2008.08.003. CCE LTER Contribution #0106 Download PDF

Bond, N A.,Batchelder, H. P.,Bograd, S. J. Forecasting northeast Pacific ecosystem responses to the La Niña of Fall-Winter 2007. EOS, Transactions of the American Geophysical Union 89(35), 321-322 2008, DOI:10.1029/2008eo350002. CCE LTER Contribution #0092 Download PDF

Drazen, J. C.,Popp, B. N.,Choy, C. A.,Clemente, T.,De Forest, L.,Smith, Jr., K. L. Bypassing the abyssal benthic food web: Macrourid diet in the eastern North Pacific inferred from stomach content and stable isotopes analyses. Limnology and Oceanography 53, 2644-2654 2008, . CCE LTER Contribution #0087 Download PDF

Drazen, J. C.,Phleger, C. F.,Guest, M. A.,Nichols, P. D. Lipid, sterols and fatty acid composition of abyssal holothurians and ophiuroids from the North-East Pacific Ocean: Food web implications. Comparative Biochemistry and Physiology, Part B 151, 79-87 2008, DOI:10.1016/j.cbpb.2008.05.013. CCE LTER Contribution #0086 Download PDF

Samo, T. J.,Malfatti, F.,Azam, F. A new class of transparent organic particles in seawater visualized by a novel fluorescence approach. Aquatic Microbial Ecology 53, 307-321 2008, DOI:10.3354/ame01251. CCE LTER Contribution #0083 Download PDF

Barlow, J.,Kahru, M.,Mitchell, B. G. Cetacean biomass, prey consumption, and primary production requirements in the California Current ecosystem. Marine Ecology Progress Series 371, 285-295 2008, DOI:10.3354/meps07695. CCE LTER Contribution #0082 Download PDF

Ohman, M. D.,Hobbie, J. E. Aquatic Research in the U.S. LTER Network. Limnology and Oceanography Bulletin 17(3), 74-79 2008, . CCE LTER Contribution #0081 Download PDF

May, R. M.,Levin, S. A.,Sugihara, G. Ecology for bankers. Nature 451, 893-895 2008, DOI:10.1038/451893a. CCE LTER Contribution #0075 Download PDF

Ohman, M. D.,Durbin, E. G.,Runge, J. A.,Sullivan, B. K.,Field, D. B. Relationship of predation potential to mortality of Calanus finmarchicus on Georges Bank, Northwest Atlantic. Limnology and Oceanography 53(4), 1643-1655 2008, . CCE LTER Contribution #0074 Download PDF

Davis, R. E., M.D. Ohman, B. Hodges, D.L. Rudnick, and J.T. Sherman Glider surveillance of physics and biology in the southern California Current System. Limnology and Oceanography 53(5, part 2), 2151-2168 2008, . CCE LTER Contribution #0073 Download PDF

Ohman, M. D.,Hsieh, C. -H. Spatial differences in mortality of Calanus pacificus within the California Current System. Journal of Plankton Research 30, 359-366 2008, . CCE LTER Contribution #0072 Download PDF

Hsieh, C. -H.,Anderson, C.,Sugihara, G. Extending nonlinear analysis to short ecological time series. American Naturalist 171(1), 71-80 2008, DOI:10.1086/524202. CCE LTER Contribution #0070 Download PDF

Landry, M. R.,Decima, M.,Simmons, M. P.,Hannides, C. C. S.,Daniels, E. Mesozooplankton biomass and grazing responses to Cyclone Opal, a subtropical mesoscale eddy. Deep-Sea Research Part II 55(10), 1378-1388 2008, DOI:10.1016/j.dsr2.2008.01.005. CCE LTER Contribution #0069 Download PDF

Landry, M. R.,Brown, S. L.,Rii, Y. M.,Selph, K. E.,Bidigare, R. R.,Yang, E. J.,Simmons, M. P. Depth-stratified phytoplankton dynamics in Cyclone Opal, a subtropical mesoscale eddy. Deep-Sea Research Part II 55(10), 1348-1359 2008, DOI:10.1016/j.dsr2.2008.02.001. CCE LTER Contribution #0068 Download PDF

Chekalyuk, A.,Hafez, M. Advanced laser fluorometry of natural aquatic environments. Limnology and Oceanography: Methods 6, 591-609 2008, . CCE LTER Contribution #0063 Download PDF

Kahru, M.,Mitchell, B. G. Ocean color reveals increased blooms in various parts of the World. EOS, Trans. AGU 89(18), p. 170 2008, . CCE LTER Contribution #0062 Download PDF

Baker, K. S.,Chandler, C. Enabling long-term oceanographic research: Changing data practices, information management strategies and informatics. Deep-Sea Research II: Special Series Palmer Long-Term Ecological Research 55(18-19), 2132-2142 2008, DOI:10.1016/j.dsr2.2008.05.009. CCE LTER Contribution #0059 Download PDF

Booth, J. A.,Ruhl, H. A.,Lovell, L.,Bailey, D. M.,Smith, Jr., K. L. Size-frequency dynamics of NE Pacific abyssal ophiuroids (Echinodermata: Ophiuroidea). Marine Biology 154(6), 933-941 2008, DOI:10.1007/s00227-008-0982-3. CCE LTER Contribution #0058 Download PDF

Smith, Jr., K. L.,Ruhl, H. A.,Kaufmann, R. S.,Kahru, M. Tracing abyssal food supply back to upper-ocean processes over a 17-year time series in the NE Pacific. Limnology and Oceanography 53, 2655-2667 2008, . CCE LTER Contribution #0057 Download PDF

Ruhl, H. A.,Ellena, J. A.,Smith, Jr., K. L. Connections between climate, food limitation, and carbon cycling in abyssal sediment communities: a long time-series perspective. Proceedings of the National Academy of Sciences USA 105, 17006-17011 2008, DOI:10.1073/pnas.0803898105. CCE LTER Contribution #0056 Download PDF

Bograd, S. J.,Castro, C. G.,Di Lorenzo, E.,Palacios, D. M.,Bailey, H.,Gilly, W.,Chavez, F. P. Oxygen declines and the shoaling of the hypoxic boundary in the California Current. Geophysical Research Letters 35, L12607 2008, DOI:10.1029/2008gl034185. CCE LTER Contribution #0054 Download PDF

Mantyla, A. W.,Bograd, S. J.,Venrick, E. L. Patterns and controls of chlorophyll-a and primary production cycles in the Southern California Bight. Journal of Marine Systems 73(1), 48-60 2008, DOI:10.1016/j.marsys.2007.08.001. CCE LTER Contribution #0053 Download PDF

Rykaczewski, R. R. and Checkley Jr., D. M. Influence of ocean winds on the pelagic ecosystem in upwelling regions. Proceedings of the National Academy of Sciences 105(6), 1965-1970 (+ 3 figs) 2008, . CCE LTER Contribution #0051 Download PDF

Danioux, E., Klein, P., Rivière, P. Propagation of wind energy into the deep ocean through a fully turbulent mesoscale eddy field. Journal of Physical Oceanography 38, 2224-2241 2008, DOI:10.1175/2008jpo3821.1. CCE LTER Contribution #0048 Download PDF

Hopkinson, B. M.,Barbeau, K. Influence of iron on phytoplankton in subsurface chlorophyll maximum communities of the eastern Pacific. Limnology and Oceanography 53(4), 1303-1318 2008, . CCE LTER Contribution #0047 Download PDF

Di Lorenzo, E.,Schneider, N.,Cobb, K. M.,Chhak, K.,Franks, P. J.,Miller, J. C. McWilliams, A. J.,Bograd, S. J.,Arango, H.,Curchister, E.,Powell, T. M.,Rivière, P. North Pacific Gyre Oscillation links ocean climate and ecosystem change. Geophysical Research Letters , 2008, DOI:10.1029/2007gl032838. CCE LTER Contribution #0043 Download PDF

Hsieh, C. -H.,Reiss, C. S..,Hewitt, R. P.,Sugihara, G. Spatial analysis shows fishing enhances the climatic sensitivity of marine fishes. Canadian Journal of Fisheries and Aquatic Sciences 65, 947-961 2008, . CCE LTER Contribution #0042 Download PDF

Ruhl, H. A. Community change in the variable resource habitat of the abyssal NE Pacific. Ecology 89(4), 991-1000 2008, . CCE LTER Contribution #0040 Download PDF

Goericke, R., E. Venrick, T. Koslow, W.J. Sydeman, F.B. Schwing, S.J. Bograd, W.T. Peterson, R. Emmett, J.R. Lara Lara, G. Gaxiola Castro, J.G. Valdez, K.D. Hyrenbach, R.W. Bradley, M.J. Weise, J.T. Harvey, C. Collins, and N.C.H. Lo The State of the California Current, 2006-207: Regional and local processes dominate. CalCOFI Reports 48, 33-66 2007, . CCE LTER Contribution #0277 Download PDF

Meador, T. B.,Aluwihare, L. I.,Mahaffey, C. Isotopic heterogeneity and cycling of organic nitrogen in the oligotrophic ocean. Limnology and Oceanography 52(3), 934-947 2007, . CCE LTER Contribution #0139 Download PDF

Maye, A.,Hsieh, C. -H.,Sugihara, G.,Brembs, B. Order in spontaeous behavior. PLoS ONE 2(5), e443 2007, DOI:10.137/journal.pone.0000443. CCE LTER Contribution #0076 Download PDF

Benitez-Nelson, C. R.,Bidigare, R. R.,Dickey, T. D.,Landry, M. R.,Leonard, C. L.,Brown, S. L.,Nencioli, F.,Rii, Y. M.,Maiti, K.,Becker, J. W.,Bibby, T. S.,Black, W.,Cai, W. -J.,Carlson, C. A.,Chen, F.,Kuwahara, V. S.,Mahaffey, C.,McAndrew, P. M.,Quay, P. D.,Rappé, M. S.,Selph, K. E.,Simmons, M. P.,Yang, E. J. Mesoscale eddies drive increased silica export in the subtropical Pacific Ocean. Science 316(5827), 1017-1021 2007, DOI:10.1126/science.1136221. CCE LTER Contribution #0066 Download PDF

Peña, M. A.,Bograd, S. J. Time series of the Northeast Pacific. Progress in Oceanography 75(2), 115-119 2007, DOI:10.1016/j.pocean.2007.08.008. CCE LTER Contribution #0052 Download PDF

Kahru, M,Fiedler, P C.,Gille, S T.,Manzano, M,Mitchell, B G. Sea level anomalies control phytoplankton biomass in the Costa Rica Dome area. Geophysical Research Letters 34, L22601 2007, DOI:10.1029/2007gl031631. CCE LTER Contribution #0050 Download PDF

Lavaniegos, B. E.,Ohman, M. D. Coherence of long-term variations of zooplankton in two sectors of the California Current System. Progress in Oceanography 75(1), 42-69 (+ electronic supplement) 2007, DOI:10.1016/j.pocean.2007.07.002. CCE LTER Contribution #0046 Download PDF

Roth, J. E.,Mills, K. L.,Sydeman, W. J. Chinook salmon (Oncorhynchus tshawytscha) – seabird covariation off central California and possible forecasting applications. Canadian Journal of Fisheries and Aquatic Sciences 64, 1080-1090 2007, . CCE LTER Contribution #0045 Download PDF

Kim, H. -J.,Miller, A. J. Did the thermocline deepen in the southern California Current after the 1976-77 climate regime shift?. Journal of Physical Oceanography 37, 1733-1739 2007, . CCE LTER Contribution #0044 Download PDF

Vardaro, M. F.,Parmley, D.,Smith Jr., K. L. A study of possible "reef effects" caused by a long-term time lapse camera in the deep North Pacific. Deep-Sea Research I 54, 1231-1240 2007, . CCE LTER Contribution #0039 Download PDF

Ruhl, H. A. Abundance and size distribution dynamics of abyssal epibenthic megafauna in the Northeast Pacific. Ecology 88(3), 1250-1262 2007, . CCE LTER Contribution #0038 Download PDF

King, A. L.,Barbeau, K. Evidence for phytoplankton iron limitation in the southern California Current System. Marine Ecology Progress Series 342, 91-103 2007, . CCE LTER Contribution #0035 Download PDF

Chhak, K.,Di Lorenzo, E. Decadal variations in the California Current upwelling cells. Geophysical Research Letters 34, L14604 2007, . CCE LTER Contribution #0034 Download PDF

Aksnes, D. L.,Ohman, M.,Rivière, P. Optical effect on the nitracline in a coastal upwelling area. Limnology and Oceanography 52(3), 1179-1187 2007, DOI:10.4319/lo.2007.52.3.1179. CCE LTER Contribution #0029 Download PDF

Baker, K. S.,Bowker, G. C. Information Ecology: Open System Environment for Data, Memories, and Knowing. Journal of Intelligent Information Systems. BDEI Special Series 29, 127-144 2007, . CCE LTER Contribution #0024 Download PDF

Aksnes, Dag L. Evidence for visual constraints in large marine fish stocks. Limnology and Oceanography 52(1), 198-203 2007, . CCE LTER Contribution #0021 Download PDF

Field, D.,Cayan, D.,Chavez, F. Secular warming in the California Current and North Pacific. Reports of California Cooperative Oceanic Fisheries Investigations 47, 92 2006, . CCE LTER Contribution #0176 Download PDF

Sieracki, M. E.,Gilg, I. C.,Thier, E. C.,Poulton, N. J.,Goericke, R. Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnology and Oceangraphy 51(1), 38-46 2006, . CCE LTER Contribution #0144 Download PDF

Murakami, H.,Sasaoka, K.,Hosoda, K.,Fukushima, H.,Toratani, M.,Frouin, R.,Mitchell, B. G.,Kahru, M.,Deschamps, P. -Y.,Clark, D.,Flora, S.,Kishino, M.,Saitoh, S. -I.,Asanuma, I.,Tanaka, A.,Sasaki, H.,Yokouchi, K.,Kiyomoto, Y.,Saito, H.,Dupouy, C.,Siripong, A.,Matsumura, S.,Ishizaka, J. Validation of ADEOS-2 GLI ocean color products using in-situ observations. Journal of Oceanography 62(3), 373-393 2006, . CCE LTER Contribution #0133 Download PDF

Peterson, B.,Emmett, R.,Goericke, R.,Venrick, E.,Mantyla, A.,Bograd, S. J.,Schwing, F. B.,Hewitt, R.,Lo, N.,Watson, W.,Barlow, J.,Lowry, M.,Ralston, S.,Forney, K. A.,Lavaniegos, B. E.,Sydeman, W. J.,Hyrenbach, D.,Bradley, R. W.,Warzybok, P.,Chavez, F.,Hunter, K.,Benson, S.,Weise, M.,Harvey, J.,Gaxiola-Castro, G.,Durazo, R. The State of the California Current, 2005-2006: Warm in the North, Cool in the South. CalCOFI Reports 47, 30-74 2006, . CCE LTER Contribution #0041 Download PDF

Bailey, D. M.,Ruhl, H. A.,Smith, K. L. Long-term change in benthopelagic fish abundance in the abyssal Northeast Pacific Ocean. Ecology 87(3), 549-555 2006, . CCE LTER Contribution #0037 Download PDF

Mackas, D. L.,Peterson, W. T.,Ohman, M. D.,Lavaniegos, B. E. Zooplankton anomalies in the California Current system before and during the warm ocean conditions of 2005. Geophysical Research Letters 33, L22S07 2006, . CCE LTER Contribution #0030 Download PDF

Rivière, P.,Pondaven, P. Phytoplankton competitions in frontal oceanic regions. Journal of Marine Systems 60, 345-364 2006, . CCE LTER Contribution #0028 Download PDF

Rintoul, C. R.,Langabeer-Schlagenhauf, B.,Morgan, K. H.,Hyrenbach, K. D.,Sydeman, W. J. Atlas of California Current Marine Bird and Mammal Distributions, Version 1. PRBO Technical Report , 1-194 2006, . CCE LTER Contribution #0027 Download PDF

Hsieh, C. -H.,Reiss, C. S..,Hunter, J. R..,Beddington, J. R..,May, R. M.,Sugihara, G. Fishing elevates variability in the abundance of exploited species. Nature 443(7113), 859-862 2006, . CCE LTER Contribution #0023 Download PDF

Sydeman, W J.,Bradley, R W.,Warzybok, P,Abraham, C L.,Jahncke, J,Hyrenbach, K D.,Kousky, V,Hipfner, J M.,Ohman, Mark D. Planktivorous Auklet Ptychoramphus aleuticus Responses to Ocean Climate, 2005: Unusual Atmospheric Blocking?. Geophysical Research Letters 33(22), L22S09 2006, . CCE LTER Contribution #0019 Download PDF

Yen, P P. W.,Sydeman, W J.,Bograd, S J.,Hyrenbach, K D. Spring-time distributions of migratory marine birds in the southern California Current: Oceanic eddy associations and coastal habitat hotspots over 17 years. Deep-Sea Research, Part II 53(3-4), 399 2006, . CCE LTER Contribution #0018 Download PDF

Karasti, H.,Baker, K. S.,Halkola, E. Enriching the Notion of Data Curation in e-Science: Data Managing and Information Infrastructuring in the Long Term Ecological Research (LTER) Network. Journal of Computer Supported Cooperative Work: An International Journal 15(4), 321-358 2006, . CCE LTER Contribution #0013 Download PDF

Hsieh, C. -H.,Ohman, M. D. Biological responses to environmental forcing: The Linear Tracking Window hypothesis. Ecology 87(8), 1932-1938 2006, . CCE LTER Contribution #0010 Download PDF

Hereu, C M.,Lavaniegos, B E.,Gaxiola-Castro, G,Ohman, M D. Composition and potential grazing impact of salp assemblages off Baja California during the 1997-1999 El Niño and La Niña. Marine Ecology Progress Series 318, 123-140 2006, . CCE LTER Contribution #0009 Download PDF

Field, D B.,Baumgartner, T R.,Charles, C D.,Ferreira-Bartrina, V,Ohman, M D. Planktonic foraminifera of the California Current reflect twentieth century warming. Science 311(5757), 63-66 2006, . CCE LTER Contribution #0008 Download PDF

Smith, Jr., K L.,Baldwin, R J.,Ruhl, H A.,Kahru, M,Mitchell, B G.,Kaufmann, R S. Climate effect on food supply to depths greater than 4,000 meters in the northeast Pacific. Limnology and Oceanography 50(1), 166-176 2006, . CCE LTER Contribution #0005 Download PDF

Goericke, R., E. Venrick, T. Koslow,,A. Mantyla,S.J, Bograd,F.B. Schwing,A. Huyer,R.L. Smith,P.A. Wheeler,R.Hooff,W.T. Peterson,F. Chavez,C. Collins,B. Marinovic,N. Lo,G. Gaxioloa-Castro,R. Durazo,K.D. Hyrenbach,Sydeman, W.J. The State of the California Current, 2004-2005: Still cool?. CalCOFI Reports 46, 32-71 2005, . CCE LTER Contribution #0012 Download PDF

Di Lorenzo, E.,Miller, A. J.,Schneider, N.,McWilliams, J. C. The warming of the California Current: dynamics and ecosystem implications. Journal of Physical Oceanography 35(3), 336-362 2005, . CCE LTER Contribution #0007 Download PDF

Bograd, S J.,Mantyla, A W. On the subduction of upwelled waters in the California Current. Journal of Marine Research 63(5), 863-885 2005, . CCE LTER Contribution #0006 Download PDF

Hsieh, C. -H.,Glaser, S. M.,Lucas, A. J.,Sugihara, G. Distinguishing random environmental fluctuations from ecological catastrophes for the North Pacific Ocean. Nature 435(7040), 336 2005, . CCE LTER Contribution #0004 Download PDF

Hsieh, C. -H.,Reiss, C.,Watson, W.,Allen, M. J.,Hunter, J. R.,Lea, R. N.,Rosenblatt, R.,Smith, P. E.,Sugihara, G. A comparison of long-term trends and variability in populations of larvae of exploited and unexploited fishes in the Southern California region: a community approach. Progress in Oceanography 67(1-2), 160-185 2005, . CCE LTER Contribution #0001 Download PDF

Edited Books

Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, 378 pp., U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0260 Link

Sea Secrets: Tiny Clues to a Big Mystery, 32 pp., Moonlight Publishing, Layfayette, CO, 2008. . CCE LTER Contribution #0065

Book Sections

Ohman, M.D. Prologue to: Sardet, C. Plankton: Wonders of the Drifting World pp 224, University of Chicago Press, Chicago, IL, 2015. . CCE LTER Contribution #0318; AR2015

Peters, D. P. C.,Laney, C. M.,Lugo, A. E.,Collins, S. L.,Driscoll, C. T.,Groffman, P. M.,Grove, J. M.,Knapp, A. K.,Kratz, T. K.,Ohman, M. D.,Waide, R. B.,Yao, J. Long-term trends in precipitation and surface water chemistry in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C.,Laney, C.M.,Lugo, A.E.,Collins, S.L.,Driscoll, C.T.,Groffman, P.M.,Grove, J.M.,Knapp, A. K.,Kratz, T.K.,Ohman, M.D.,Waide, R.B.,Yao, J., pp 115-161, U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0266 Download PDF

Peters, D. P. C.,Laney, C. M.,Lugo, A. E.,Collins, S. L.,Driscoll, C. T.,Groffman, P. M.,Grove, J. M.,Knapp, A. K.,Kratz, T. K.,Ohman, M. D.,Waide, R. B.,Yao, J. Long-term trends in production, abundance, and richness of plants and animals in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C.,Laney, C.M.,Lugo, A.E.,Collins, S.L.,Driscoll, C.T.,Groffman, P.M.,Grove, J.M.,Knapp, A. K.,Kratz, T.K.,Ohman, M.D.,Waide, R.B.,Yao, J., pp 191-205, U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0265 Download PDF

Peters, D. P. C.,Laney, C. M.,Lugo, A. E.,Collins, S. L.,Driscoll, C. T.,Groffman, P. M.,Grove, J. M.,Knapp, A. K.,Kratz, T. K.,Ohman, M. D.,Waide, R. B.,Yao, J. Long-term trends in human demography and economy across sites in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C.,Laney, C.M.,Lugo, A.E.,Collins, S.L.,Driscoll, C.T.,Groffman, P.M.,Grove, J.M.,Knapp, A. K.,Kratz, T.K.,Ohman, M.D.,Waide, R.B.,Yao, J., pp 162-190, U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0264 Download PDF

Peters, D. P. C.,Laney, C. M.,Lugo, A. E.,Collins, S. L.,Driscoll, C. T.,Groffman, P. M.,Grove, J. M.,Knapp, A. K.,Kratz, T. K.,Ohman, M. D.,Waide, R. B.,Yao, J. Long-term trends in climate and climate-related drivers in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C.,Laney, C.M.,Lugo, A.E.,Collins, S.L.,Driscoll, C.T.,Groffman, P.M.,Grove, J.M.,Knapp, A. K.,Kratz, T.K.,Ohman, M.D.,Waide, R.B.,Yao, J., pp 81-114, U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0263 Download PDF

Peters, D. P. C.,Laney, C. M.,Lugo, A. E.,Collins, S. L.,Driscoll, C. T.,Groffman, P. M.,Grove, J. M.,Knapp, A. K.,Kratz, T. K.,Ohman, M. D.,Waide, R. B.,Yao, J. Long-term trends in ecological systems: an introduction to cross-site comparisons and relevance to global change studies in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C.,Laney, C.M.,Lugo, A.E.,Collins, S.L.,Driscoll, C.T.,Groffman, P.M.,Grove, J.M.,Knapp, A. K.,Kratz, T.K.,Ohman, M.D.,Waide, R.B.,Yao, J., pp 1-20, U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0262 Download PDF

Peters, D. P. C.,Fraser, W. R.,Kratz, T. K.,Ohman, M. D.,Rassweiler, A.,Holbrook, S. J.,Schmitt, R. J. Cross-site comparisons of state-change dynamics in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C.,Laney, C.M.,Lugo, A.E.,Collins, S.L.,Driscoll, C.T.,Groffman, P.M.,Grove, J.M.,Knapp, A. K.,Kratz, T.K.,Ohman, M.D.,Waide, R.B.,Yao, J., pp 36-41, U.S. Department of Agriculture, Washington,D.C., 2013. . CCE LTER Contribution #0261 Download PDF

Ohman, M. D.,Kratz, T. K. Cross-site comparisons of ecological responses to climate and climate-related drivers in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C., Laney, C.M., Lugo, A.E., Collins, S.L., Driscoll, C.T., Groffman, P.M., Grove, J.M., Knapp, A.K., Kratz, T.K., Ohman, M.D., Waide, R.B., and Yao, J., pp 28-35, U.S. Department of Agriculture, Washington, D.C., 2013. . CCE LTER Contribution #0200 Download PDF

Laney, C. M.,Baker, K. S.,Peters, D. P. C.,Ramsey, K. W. Recommendations for Data Accessibility in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C., Laney, C.M., Lugo, .AE., Collins, S.L., Driscoll, C.T., Groffman, P.M., Grove, J.M., Knapp, A.K., Kratz, T.K., Ohman, M.D., Waide, R.B., and Yao, J., pp 216-225, U.S. Department of Agriculture, Washington, D.C., 2013. . CCE LTER Contribution #0149 Download PDF

Laney, C. M.,Peters, D. P. C.,Baker, K. S.,Ramsey, K. W. History and Organization of the EcoTrends Project in Long-Term Trends in Ecological Systems: A Basis for Understanding Responses to Global Change, edited by Peters, D.P.C., Laney, C.M., Lugo, A..E, Collins, S.L., Driscoll, C.T., Groffman, P.M., Grove, J.M., Knapp, A.K., Kratz, T.K., Ohman, M.D., Waide, R.B., and Yao, J., pp 21-27, U.S. Department of Agriculture, Washington, D.C., 2013. . CCE LTER Contribution #0148 Download PDF

Harris, R.P.,Buckley, L.J.,Campbell, R.G.,Chiba, S.,Costa, D.P.,Dickey, T.D.,Irigoien, X.,Kiorboe, T.,Mollmann, C.,Ohman, M.D.,Runge, J. A.,Saiz, E.,Wiebe, P.H. Dynamics of marine ecosystems: observation and experimentation in Marine Ecosystems and Global Change, edited by Barange, M.,Field, J.G.,Harris, R.P.,Hofmann, E.E.,Perry, R.I.,Werner, F., pp 129-178, Oxford University Press, Inc., New York, Oxford, 2010. . CCE LTER Contribution #0174 Download PDF

Bograd, S. J.,Sydeman, W. J.,Barlow, J.,Booth, A.,Brodeur, R.D.,Calambokidis, J.,Chavez, F.,Crawford, W. R.,Di Lorenzo, E.,Durazo, R.,Emmett, R.,Field, J.,Gaxiola-Castro, G,Gilly, W.,Goericke, R,Hildebrand, J.,Irvine, J.E.,Kahru, M,Koslow, J. A.,Lavaniegos, B. E.,Lowry, M.,Mackas, D. L.,Manzano-Sarabia, M.,McKinnell, S.M.,Mitchell, B G.,Munger, L.,Perry, R.I.,Peterson, W.T.,Ralston, S.,Schweigert, J.,Suntsov, A.,Tanasichuk, R.,Thomas, A. C.,Whitney, F.A. Status and trends of the California Current region, 2003-2008 in Marine Ecosystems of the North Pacific Ocean 2003-2008; PICES Special Publication 4, edited by McKinnell, S.M. and Dagg, M.J., pp 393; pgs 106-141, , , 2010. . CCE LTER Contribution #0153 Download PDF

Baker, K. S.,Millerand, F. Infrastructuring ecology: challenges in achieving data sharing in Collaboration in the New Life Sciences, edited by Parker, J.,Vermeulen, N.,Penders, B., pp , Ashgate Publishing, Surrey, England, , 2010. . CCE LTER Contribution #0147 Download PDF

Bowker, G.,Baker, K. S.,Millerand, F.,Ribes, D. Towards Information Infrastructure Studies: Ways of Knowing in a Networked Environment in International Handbook of Internet Research, edited by Hunsinger, J.,Klasrup, L.,Allen, M., pp 97-117, New York, Springer, , 2010. DOI:10.1007/978-1-4020-9789-8_5. CCE LTER Contribution #0060 Download PDF

Landry, M. R. Grazing processes and secondary production in the Arabian Sea: A simple food web synthesis with measurement constraints in Indian Ocean Biogeochemical Processes and Ecological Variability, edited by Wiggert, J.D., R. R. Hood, S. W. A. Naqvi, K. H. Brink, and S. L. Smith, pp pp. 133 - 146, AGU, Washington, D. C., 2009. DOI:10.1029/2008GM000781. CCE LTER Contribution #0111

Millerand, F.,Bowker, G. C. Metadata Standard: Trajectories and Enactment in the Life of an Ontology in Formalizing Practices: Reckoning with Standards, Numbers and Models in Science and Everyday Life, edited by Lampland, M.,Star, S. L., pp , Cornell University Press, , 2009. . CCE LTER Contribution #0036 Download PDF

May, R. M.,Crawley, M.,Sugihara, G. Patterns in Multispecies Communities in Theoretical Ecology, edited by May, R. M.,McLean, A., pp , Oxford University Press, , 2007. . CCE LTER Contribution #0071

Sala, E,Sugihara, G Food-web theory provides guidelines for marine conservation in Food Webs: An Ecosystem Approach, edited by Belgrano, A., pp 170-183, Oxford University Press, Oxford, 2005. . CCE LTER Contribution #0002

Reports

Leirness JB, Adams J, Ballance LT, Coyne M, Felis JJ, Joyce T, Pereksta DM, Winship AJ, Jeffrey CFG, Ainley D, Croll D, Evenson J, Jahncke J, McIver W, Miller PI, Pearson S, Strong C, Sydeman W, Waddell JE, Zamon JE, and Christensen J., Modeling at-sea density of marine birds to support renewable energy planning on the Pacific Outer Continental Shelf of the contiguous United States in OCS Study BOEM 2021-014 pp 385 pgs, US Department of the Interior, Bureau of Ocean Energy Management, Camarillo (CA), 2021. . CCE LTER Contribution #0536; AR2022 Link

Sydeman, W. J., C. Wright, and S. A. Thompson, Seabirds on the CalCOFI/CCE-LTER Survey in Data Report pp , FIAER, Farallon Institute, Petaluma, 2021. . CCE LTER Contribution #0535; AR2022

Di Lorenzo E., A. Miller, C. Anderson, K. Karnauskas, J. Keister, M. D. Ohman, and A. Subramanian, Forecasting ENSO impacts on marine ecosystems of the US West Coast in A joint US CLIVAR and OCB workshop report pp 58, , San Diego, CA, 2019. DOI:10.5065/15kw-ep41. CCE LTER Contribution #0477; AR2020 Download PDF

Di Lorenzo, E. and A.J. Miller, Forecasting ENSO Impacts in the California Current System in US CLIVAR Variations pp 1-47, US CLIVAR Variations and OCB, , 2017. . CCE LTER Contribution #0393; FRII2017

Sydeman W.J., S. Webb, M. Losekoot and S.A. Thompson, Seabirds on the CalCOFI/CCE-LTER Survey, Spring 2017 in Data Report pp 10 pgs, Farallon Institute, , 2017. . CCE LTER Contribution #0391; FRII2017 Download PDF

Jacox, M.G., D.L. Rudnick, and C.A. Edwards, Dominant physical mechanisms driving ecosystem response to ENSO in the California Current System in US CLIVAR Variations pp 21-26, US CLIVAR and OCB, , 2017. . CCE LTER Contribution #0390; AR2017,FRII2017 Download PDF

Capotondi, A., K. Karnauskas, A. Miller, and A. Subramanian, ENSO diversity and its implications for US West Coast marine ecosystems in US CLIVAR Variations pp 16-21, US CLIVAR and OCB, , 2017. . CCE LTER Contribution #0381; AR2017,FRII2017 Download PDF

Ohman, M.D., N. Mantua, J. Keister, M. Garcia-Reyes, and S. McClatchie, ENSO impacts on ecosystem indicators in the California Current System in US CLIVAR Variations pp 8-15, US CLIVAR and OCB, , 2017. . CCE LTER Contribution #0380; AR2017,FRII2017 Download PDF

Di Lorenzo, E. and A.J. Miller, A framework for ENSO predictability of marine ecosystem drivers along the US West Coast in US CLIVAR Variations pp 1-7, US CLIVAR and OCB, , 2017. . CCE LTER Contribution #0379; AR2017,FRII2017 Download PDF

Sydeman, W J., D. Breese and M. Losekoot, Seabirds on the CalCOFI/CCE-LTER Surveys, 2012: Annual Data Report in FIAER Annual Data Report pp 16, FIAER, Petaluma, CA, 2013. . CCE LTER Contribution #0274 Download PDF

Kadir, T., L. Mazur, C. Milanes, and K. Randles, Indicators of climate change in California in pp 258, California Environmental Protection Agency and Office of Environmental Health Hazard Assessment, , 2013. . CCE LTER Contribution #0272

Zamon, J.E., T.P. Good and W.J. Sydeman, Ecosystem components, protected species - Seabirds in NOAA Technical Report pp 1-40, U.S. Dept. of Commerce, , 2012. . CCE LTER Contribution #0271

Baker, K. S.,Kortz, M.,Conners, J., DataZoo: an Oceanographic Information System Supporting Scientific Research in SIO Technical Report Series pp 101 pgs, Scripps Institution of Oceanography, UC San Diego, La Jolla, 2011. . CCE LTER Contribution #0177 Link

Nur, N.,Jahncke, J.,Howar, J.,Herzog, M.,Wiens, J., Using seabirds to identify marine hotspots in the California Current System in PRBO Unpublished Report pp , Point Reyes Bird Observatory, Petaluma, CA, 2010. . CCE LTER Contribution #0158 Download PDF

, LTER Science Council Meeting and Field Trip in pp , SIO, La Jolla, 2009. . CCE LTER Contribution #0120 Download PDF

Simmons, B. E., Psst....We have a secret....and we would like to share it! in The SWMEA Connection pp , , , 2008. . CCE LTER Contribution #0104 Download PDF

Simmons, B. E., Unlocking the Clues of "Sea Secrets" in LTER Network News pp , Univ. of New Mexico, Albuquerque, 2008. . CCE LTER Contribution #0103

, Overview of CCE LTER Ecological Research Site (Mid-term Site Review) in pp , SIO, La Jolla, 2007. . CCE LTER Contribution #0122 Download PDF

, Executive Summary of the CCE LTER (Mid-term Site Review) in pp , SIO, La Jolla, 2007. . CCE LTER Contribution #0121 Download PDF

Baker, K. S.,Ohman, M. D., CCE Holds First Annual Meeting in LTER Network News pp , Univ. of New Mexico, , 2006. . CCE LTER Contribution #0022 Download PDF

Baker, K. S., Informatics and the Environmental Sciences in SIO Technical Report Series pp , Scripps Institution of Oceanography, UC San Diego, , 2005. . CCE LTER Contribution #0155 Download PDF

Simmons, B., Program Survey and Assessment, Chapter 6 in Schoolyard LTER Education Handbook pp , , , 2005. . CCE LTER Contribution #0003 Download PDF

Theses

Wolfe, W. Observations of seawater carbonate chemistry in the Southern California Current, thesis, University of California, San Diego, CA, 2022. CCE LTER Contribution #0540

McClure, C. Using BONCAT-FCM to Quantify Bacterial Production in Marine Observing Programs, M.S. thesis, University of California, San Diego, 2022. CCE LTER Contribution #0539; Y1E

Fender, C. K. Investigating Particle Size-Flux Relationships and the Biological Carbon Pump Across a Range of Ecosystem States from Coastal to Oligotrophic, M.S. thesis, Florida State University, Tallahassee, FL, 2022. CCE LTER Contribution #0538; Y6L

James, C. C. Marine microbiome structure, diversity, and function within a coastal upwelling region, thesis, University of California, San Diego, CA, 2022. CCE LTER Contribution #0537; Y6L

Irving, J. Using Lagrangian model simulations to quantify the sequestration time of remineralized CO2 in the California Current Ecosystem for different carbon flux pathways, thesis, Florida State Univ, Tallahassee, FL, 2021. CCE LTER Contribution #0518; AR2022

Forsch, K. Iron sources, sinks, and cycling in productive coastal seas, thesis, University of California, San Diego, CA, 2021. CCE LTER Contribution #0517; AR2022 Link

Rammel, Tristan Spatial and Temporal Microdiversity and Abundance of Cryptophytes in San Diego Coastal Waters, thesis, University of California, San Diego, CA, 2021. CCE LTER Contribution #0515; AR2022 Link

Lilly, L. E. Responses of the Southern California Current System Zooplankton Community to El Niño Variability, thesis, University of California, San Diego, CA, 2021. CCE LTER Contribution #0497; AR2021 Download PDF

White, M. E. Studies of Nitrogen and Organic Carbon Cycling in the Eastern Pacific Ocean Using Natural Abundance Isotopes, thesis, University of California, San Diego, CA, 2021. CCE LTER Contribution #0496; AR2021 Link

Cordero Quiros, N. Modeling Perspective of the Physical-Biological Response of the California Current to ENSO, thesis, University of California, San Diego, CA, 2020. CCE LTER Contribution #0508; AR 2021 Download PDF

Kelly, T. B. Not just sinking particles: Export and the biological carbon pump in a three-dimensional ocean driven by circulation and vertical migration, thesis, Florida State University, Tallahassee, 2020. CCE LTER Contribution #0492; AR2021 Download PDF

Coale, T. H. Characterizing the influence of iron on the cellular processes of marine phytoplankton, Ph.D thesis, University of California, San Diego, CA, 2020. CCE LTER Contribution #0490; AR2020

Choi, E. Monitoring spatiotemporal variation in the spawning activity of marine fishes through the molecular identification of fish eggs, M.S. thesis, University of California, San Diego, CA, 2020. CCE LTER Contribution #0489; AR2020 Download PDF

Rivera, S. Microbial Ecology of the California Current Ecosystem, thesis, University of California, San Diego, CA, 2020. CCE LTER Contribution #0486; AR2020 Link

Manck, L. Microbial Iron Acquisition and Organic Matter Cycling in the Marine Environment, thesis, Univeresity of California, San Diego, CA, 2020. CCE LTER Contribution #0485; AR2020 Link

Fulton, Kayleen Dynamics of Biogenic Silica in a Coastal Upwelling Filament in the California Current Ecosystem, M.S. thesis, University of California, San Diego, CA, 2019. CCE LTER Contribution #0469; AR2020 Link

Whitmore, B. M. Zooglider reveals the importance of marine snow, small particles, and body size to planktonic trophic interactions, Ph.D. thesis, University of California, San Diego, CA, 2019. CCE LTER Contribution #0468; AR2020 Download PDF

Carrière-Garwood, Jessica Transport in Internal Waves with a Background Flow: Lessons Learned from Robotic Larval Mimics, Ph.D. thesis, University of California, San Diego, CA, 2019. CCE LTER Contribution #0465; AR2020 Download PDF

Ruacho, A. Characterization of Copper-Binding Ligands and Copper Speciation in Open Ocean and Coastal Marine Systems using Electrochemical Methods, Ph.D. thesis, University of California, San Diego, CA, 2019. CCE LTER Contribution #0462; AR2020 Download PDF

Nagarkar, M. Temporal Dynamics of Marine Microbial Communities at the SIO Pier, Ph.D. thesis, University of California, San Diego, CA, 2019. CCE LTER Contribution #0453; AR2020 Download PDF

Bourne, H.L. Marine Biogeochemical Cycling of Carbon and Cadmium, Ph.D. thesis, University of California, Berkeley, CA, 2018. CCE LTER Contribution #0452; AR2020 Download PDF

Ellen, J. Improving Biological Object Classification in Plankton Images Using Convolutional Neural Networks, Geometric Features, and Context Metadata, Ph.D. thesis, University of California, San Diego, CA, 2018. CCE LTER Contribution #0437; AR2019 Download PDF

Stephens, B. Nitrogen Cycling in the Euphotic Zone of the California Current, Ph.D. thesis, University of California, San Diego, CA, 2018. CCE LTER Contribution #0399; RR2018, AR2018 Download PDF

Valencia Ramirez, B. Mesozooplankton responses to climate variability and contributions to microbial export, Ph.D. thesis, University of California, San Diego, CA, 2017. CCE LTER Contribution #0396; RR2018,AR2018 Download PDF

Brandon, J. The distribution of suspended microplastics and nanoplastics in the Northeast Pacific and their effects on zooplankton consumers, Ph.D. thesis, University of California, San Diego, CA, 2017. CCE LTER Contribution #0395; AR2018 Download PDF

Nickels, C. The co-location of blue whales and their euphausiid prey across multiple spatial scales, Ph.D thesis, University of California, San Diego, CA, 2017. CCE LTER Contribution #0394; RR2018,AR2018 Download PDF

Freibott, A. Plankton community composition and grazing dynamics in upwelling regions of the Pacific Ocean, Ph.D. thesis, University of California, San Diego, CA, 2017. CCE LTER Contribution #0384; AR2017,FRII2017 Download PDF

Hogle, S. Indicators of Iron Metabolism in Marine Microbial Genomes and Ecosystems, Ph.D. thesis, University of California, San Diego, CA, 2016. CCE LTER Contribution #0373; AR2016 Download PDF

Netburn, A.N. Responses of mesopelagic fish assemblages to environmental disturbance: ocean deoxygenation and oceanic fronts., Ph.D. thesis, University of California, San Diego, CA, 2016. CCE LTER Contribution #0356; AR2016 Download PDF

de Verneil, A. Phytoplankton in Surface Ocean Fronts: Resolving Biological Dynamics and Spatial Structure, Ph.D. thesis, University of California, San Diego, 2015. CCE LTER Contribution #0341; AR2016 Download PDF

Bresnahan, P.J. Novel Marine Inorganic Carbon Sensors for the Anthropocene, Ph.D. thesis, University of California, San Diego, 2015. CCE LTER Contribution #0338; AR2016 Download PDF

Bundy, R. M. Iron and copper organic complexation in marine systems: Detection of multiple ligand classes via electrochemistry, PhD. thesis, University of California, San Diego, 2014. CCE LTER Contribution #0308; AR2015 Download PDF

Pedler Sherwood, B. Bacterial Alteration and Removal of Dissolved Organic Matter in the Surface Ocean, Ph.D. thesis, University of California, San Diego, 2014. CCE LTER Contribution #0305; AR2015 Download PDF

Taylor, A.G. Biomass structure and environmental relationships for phytoplankton communities in the southern California Current and adjacent ocean ecosystems, Ph.D. thesis, University of California, San Diego, 2014. CCE LTER Contribution #0283; AR2014 Download PDF

Pasulka, A. L. Marine Protists: Distributions, Diversity and Dynamics, Ph.D. thesis, University of California, San Diego, 2013. CCE LTER Contribution #0282 Download PDF

Asch, R. G. Interannual-to-Decadal Changes in Phytoplankton Phenology, Fish Spawning Habitat, and Larval Fish Phenology, Ph.D. thesis, University of California, San Diego, 2013. CCE LTER Contribution #0275 Link

Powell, J. R. Ocean fronts in the Southern California Current System and their role in structuring zooplankton distributions, diel vertical migration, and size composition, Ph.D. thesis, University of California, San Diego, 2013. CCE LTER Contribution #0258 Download PDF

Samo, Ty James Microscale habitats and activities of bacteria and their ecological and biogeochemical significance in the ocean, Ph.D. thesis, University of California, San Diego, 2012. CCE LTER Contribution #0252 Download PDF

Taniguchi, D.A.A. Size structuring of planktonic communities: Biological rates and ecosystem dynamics, Ph.D. thesis, University of California, San Diego, 2012. CCE LTER Contribution #0227 Link

Cawood, A. M. Laboratory and In Situ Investigations of Factors Affecting the Growth and Survivorship of the Scyphozoan Jellyfish Aurelia sp1, Ph.D. thesis, University of California, San Diego, 2012. CCE LTER Contribution #0226 Link

Goldstein, M. C. Abundance and ecological implications of microplastic debris in the North Pacific Subtropical Gyre, Ph.D. thesis, University of California, San Diego, 2012. CCE LTER Contribution #0225 Link

Décima, M. Mesozooplankton trophic variability in a changing ocean, Ph.D. thesis, University of California, San Diego, 2011. CCE LTER Contribution #0203 Download PDF

Davison, P. C. The Export of Carbon Mediated by Mesopelagic Fishes in the Northeast Pacific Ocean, Ph.D. thesis, University of California, San Diego, 2011. CCE LTER Contribution #0202 Download PDF

Song, H. Sensitivity analysis, ocean state estimation and diagnostics in the California Current, Ph.D. thesis, University of California, San Diego, 2011. CCE LTER Contribution #0175 Download PDF

Stukel, M. R. Biological control of vertical carbon flux in the California Current and Equatorial Pacific, Ph.D. thesis, University of California, San Diego, 2011. CCE LTER Contribution #0166 Download PDF

Karakoylu, Erdem M. The foraging sorties hypothesis: Evaluating the effect of gut dynamics on copepod foraging behavior, Ph.D. thesis, University of California, San Diego, 2010. CCE LTER Contribution #0157 Download PDF

Hull, P. M. Macroevolutionary patterns in planktonic foraminifera and the recovery of pelagic ecosystems from the Cretaceous-Paleogene mass extinction, Ph.D. thesis, University of California, San Diego, 2010. CCE LTER Contribution #0156 Download PDF

Tai, V. Diversity and dynamics of synechococcus populations in the southern California bight, Ph.D. thesis, University of California, San Diego, San Diego, 2009. CCE LTER Contribution #0162 Link

Glaser, S. M. Foraging ecology of North Pacific albacore in the California Current System, Ph.D. thesis, University of California, San Diego, 2009. CCE LTER Contribution #0118 Download PDF

Rykaczewski, R. R. Influence of Oceanographic Variability on the Planktonic Prey and Growth of Sardine and Anchovy in the California Current Ecosystem, Ph.D. thesis, University of California, San Diego, 2009. CCE LTER Contribution #0116 Download PDF

Swart, N. C. Lateral carbon transport from the southern Benguela, M.S. thesis, University of Cape Town, South Africa, Cape Town, 2008. CCE LTER Contribution #0140

Soldevilla, M. S. Risso's and Pacific white-sided dolphins in the Southern California Bight: using echolocation clicks to study dolphin ecology, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0119 Download PDF

Hansman, R. Microbial metabolism in the deep ocean, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0117 Download PDF

Dupont, C. Physiological, ecological, and evolutionary studies of trace metal homeostasis in marine microbes, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0115 Download PDF

Vardaro, M. F. Deep-sea Bioturbation and the Role of the Sea Urchin Echinocrepis rostrata, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0091 Download PDF

de Jesus, R. Natural Abundance Radiocarbon Studies of Dissolved Organic Carbon (DOC) in the Marine Environment, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0084 Download PDF

King, A. L. Iron distribution and phytoplankton iron limitation in the southern California Current System, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0080 Download PDF

Kim, H. -J. Physical-biological climate changes in the Southern California Bight, Ph.D. thesis, University of California, San Diego, 2008. CCE LTER Contribution #0079 Download PDF

Hopkinson, B. M. Oceanographic and ecological consequences of iron localization in phytoplankton photosystems, Ph.D. thesis, University of California, San Diego, 2007. CCE LTER Contribution #0078 Download PDF

Romagnan, J. -B. Vertical habitat shift of mesozooplankton assemblages in the California Current, M.S. thesis, Universite Pierre et Marie Curie, Paris, 2007. CCE LTER Contribution #0031 Download PDF

Ruhl, H A. Climate and food supply influences on mobile epibenthic megafauna populations in the abyssal NE Pacific from 1989 to 2004, Ph.D. thesis, University of California, San Diego, 2006. CCE LTER Contribution #0017 Download PDF

Hsieh, C. -H. Separating environmental effects from fishing impacts on the dynamics of fish populations of the Southern California region, Ph.D. thesis, University of California, San Diego, 2006. CCE LTER Contribution #0016 Download PDF

Conference Proceedings

Graff, C. A. and J. Ellen Correlating Filter Diversity with Convolutional Neural Network Accuracy, in Correlating Filter Diversity with Convolutional Neural Network Accuracy pp 75-80, IEEE, Anaheim, CA, 2016. 10.1109/ICMLA.2016.0021 CCE LTER Contribution #0377; AR2017,FRII2017 Download PDF

Ellen, J., H. Li, and M.D. Ohman Quantifying California Current Plankton Samples with Efficient Machine Learning Techniques, in Quantifying California Current Plankton Samples with Efficient Machine Learning Techniques pp 1-9, IEEE, Washington, D.C., 2015. 10.23919/OCEANS.2015.7404607 CCE LTER Contribution #0344; AR2016 Download PDF

Karasti, H.,Baker, K. S. Community Design - Growing One's Own Information Infrastructure, in Community Design - Growing One's Own Information Infrastructure pp , , Bloomington, IN, 2008. CCE LTER Contribution #0061 Download PDF

Baker, K. S.,Millerand, F. Scientific Information Infrastructure Design: Information Environments and Knowledge Provinces, in Scientific Information Infrastructure Design: Information Environments and Knowledge Provinces pp 1-6, , Milwaukee, WI, 2007. CCE LTER Contribution #0033 Download PDF

Ribes, D.,Baker, K. S. Modes of Social Science Engagement in Community Infrastructure Design, in Modes of Social Science Engagement in Community Infrastructure Design pp 107-130, Springer, Michigan State University, 2007. CCE LTER Contribution #0032 Download PDF

Baker, K. S.,Millerand, F. Articulation Work Supporting Information Infrastructure Design: Coordination, Categorization, and Assessment in Practice, in Articulation Work Supporting Information Infrastructure Design: Coordination, Categorization, and Assessment in Practice pp , HICSS40, IEEE Computer Society, Big Island, Hawaii, 2007. CCE LTER Contribution #0026 Download PDF

Baker, K. S.,Stocks, K. I. Building Environmental Information Systems: Myths and Interdisciplinary Lessons, in Building Environmental Information Systems: Myths and Interdisciplinary Lessons pp , HICSS40, IEEE Computer Society, Big Island, Hawaii, 2007. CCE LTER Contribution #0025 Download PDF

Ribes, D.,Baker, K. S. Elements of Social Science Engagement in Information Infrastructure Design, in Elements of Social Science Engagement in Information Infrastructure Design pp 450, , San Diego, CA, 2006. CCE LTER Contribution #0020 Download PDF

Ribes, D.,Baker, K. S.,Millerand, F.,Bowker, G. C. Comparative Interoperability Project: Configurations of Community, Technology, Organization, in Comparative Interoperability Project: Configurations of Community, Technology, Organization pp , Academic Press, New York, 2005. CCE LTER Contribution #0015 Download PDF

Baker, K. S.,Ribes, D.,Millerand, F.,Bowker, G. C. Interoperability Strategies for Scientific Cyberinfrastructure: Research and Practice, in Interoperability Strategies for Scientific Cyberinfrastructure: Research and Practice pp , , , 2005. CCE LTER Contribution #0014 Download PDF

Baker, K. S.,Jackson, S. J.,Wanetick, J. R. Strategies Supporting Heterogeneous Data and Interdisciplinary Collaboration: Towards an Ocean Informatics Environment, in Strategies Supporting Heterogeneous Data and Interdisciplinary Collaboration: Towards an Ocean Informatics Environment pp , HICSS38, IEEE Computer Society, Big Island, Hawaii, 2005. CCE LTER Contribution #0011 Download PDF

Magazine Articles

Scientia, 2018, New Perspectives on Marine Ecology: Technology Informs Oceanic Carbon Models. Mark D. Ohman. https://www.scientia.global , 10.26320/SCIENTIA266 CCE LTER Contribution #0427; AR2019 Link

Ramirez, C., 2015, I was a terrified teacher at sea. California Educator 19(8), 12-13 CCE LTER Contribution #0319; AR2015 Link

Aggregated Databases

Kiko, R., Picheral, M., Antoine, D., Babin, M., Berline, L., Biard, T., Boss, E., Brandt, P., Carlotti, F., Christiansen, S., Coppola, L., de la Cruz, L., Diamond-Riquier, E., de Madron, X.D., Elineau, A., Gorskey, G., Guidi, L., Hauss, H., Irisson, J.-O., Karp-Boss, L., Karstensen, J., Kim, D.-g., Lekanoff, R.M., Lombard, F., Lopes, R.M., Marec, C., McDonnell, A., Niemeyer, D., Noyon, M., O'Daly, S., Ohman, M.D., Pretty, J.L., Rogge, A., Searson, S., Shibata, M., Tanaka, Y., Tanhua, T., Taucher, J., Trudnowska, E., Turner, J.S., Waite, A.M., and Stemmann, L., The global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5 - version 1. Pangaea , 2021, DOI:10.1594/PANGAEA.924375. CCE LTER Contribution #0513; AR 2021 Link